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. 2018 Feb 8;46(7):3366–3381. doi: 10.1093/nar/gky096

Table 2. Plasmids used in this study.

Plasmids Details
pIB307 pMAK705-based vector for allelic exchange; temperature-sensitive replicon (61)
pDW-mAf2 pIB307 containing upstream and downstream flanking regions of micA
pDW-mFf2 pIB307 containing upstream and downstream flanking regions of micF
pDW-hBf2 pIB307 containing upstream and downstream flanking regions of ryhB
pDW-bBf2 pIB307 containing upstream and downstream flanking regions of rybB
pDW-sff2 pIB307 containing upstream and downstream flanking regions of spf
pDW-oAf2 pIB307 containing upstream and downstream flanking regions of omrA
pDW-oBf2 pIB307 containing upstream and downstream flanking regions of omrB
pDW-rAf2 pIB307 containing upstream and downstream flanking regions of rprA
pDW-fSf2 pIB307 containing upstream and downstream flanking regions of fnrS
pDW-mSf2 pIB307 containing upstream and downstream flanking regions of mcaS
pDW-mAft pDW-mAf2 + tet cassette from pTOF61
pDW-mFft pDW-mFf2 + tet cassette from pTOF61
pDW-hBft pDW-hBf2 + tet cassette from pTOF61
pDW-bBft pDW-bBf2 + tet cassette from pTOF61
pDW-sfft pDW-sff2 + tet cassette from pTOF61
pDW-oAft pDW-oAf2 + tet cassette from pTOF61
pDW-oBft pDW-oBf2 + tet cassette from pTOF61
pDW-rAft pDW-rAf2 + tet cassette from pTOF61
pDW-fSft pDW-fSf2 + sacB/kan cassette from pDG028
pDW-mSft pDW-mSf2 + tet cassette from pTOF61
pTOF61 A plasmid derived from pTOF1 (62) has TcR cloned into the SmaI site
pDG028 Low-copy-number vector containing sacB/kan cassette (25)
pDW6 pAJR70 digested with BamHI/KpnI; whole sepL gene with its own promoter amplified from ZAP193 and inserted (10)
pDW-LEE1 Encodes full length Ler fusion to GFP expressed from WT promoter (33)
pDW-LEE5 Encodes full length Tir fusion to GFP expressed from WT promoter (33)
pDW26 First 51bp of sepL cloned in frame to egfp in pAJR70 (10)
pDW6-S1 Mutation of sepL 5′UTR with S1 primers
pDW6-S2 Mutation of sepL 5′UTR with S2 primers
pDW6-S3 Mutation of sepL 5′UTR with S3 primers
pDW6-C1 Mutation of sepL 5′UTR with C1 primers
pDW6-C2 Mutation of sepL 5′UTR with C2 primers
pDW6-C3 Mutation of sepL 5′UTR with C3 primers
pDW6-C4 Mutation of sepL 5′UTR with C4 primers
pDW6-C5 Mutation of sepL 5′UTR with C5 primers
pDW6-H1 Mutation of sepL 5′UTR with H1 primers
pIB-spf pIB307 containing spf plus upstream and downstream flanking regions
pIB-spf-S1 pIB-spf mutated with S1 primers
pIB-spf-S2 pIB-spf mutated with S2 primers