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. 2018 Feb 8;46(7):3366–3381. doi: 10.1093/nar/gky096

Table 3. Primers used in this study.

Primer Sequence Application
micA55 CCCAAGCTTcggcggcatcgagcctc pDW-mAf2
micA53 GCTCTAGAGCGGCCGC atatactcagactcgcctgg pDW-mAf2
micA35 GCTCTAGAtctgtcaggcgtgtttttcc pDW-mAf2
micA33 GGGGTACCtcgcaactactatcgcttcg pDW-mAf2
micF55 CCCAAGCTTcatcagtacgtttggagctg pDW-mFf2
micF53 GCTCTAGAGCGGCCGCggtagttattctagttgcgag pDW-mFf2
micF35 GCTCTAGAtacccttctttacacacttttc pDW-mFf2
micF33 CGGGATCCagccacgaccgttgccag pDW-mFf2
ryhB55 CCCAAGCTTtcatatgaagaattgaatctgtg pDW-hBf2
ryhB53 CGGGATCCGCGGCCGCtgatcgcgagacaataataatc pDW-hBf2
ryhB35 CGGGATCCggtgctggctttttttttgatc pDW-hBf2
ryhB33 GGGGTACCcggcttcatctcttctctg pDW-hBf2
mcaS55 GCTCTAGActttcgctggctgaaactatc pDW-mSf2
mcaS53 CGGGATCCGCGGCCGCcggtgactgtgttataacgg pDW-mSf2
mcaS35 CGGGATCCgcagttttaactttgcagatag pDW-mSf2
mcaS33 GGGGTACCcgttcataaattaccctgacac pDW-mSf2
rybB55 CCCAAGCTTgattctggcaaatccagacg pDW-bBf2
rybB53 GCTCTAGAGCGGCCGCggcactaattaagactgatgc pDW-bBf2
rybB35 GCTCTAGAtgcctgaaatttatctactacc pDW-bBf2
rybB33 CGGGATCCcacttccgcagaaccaaaac pDW-bBf2
rprA55 GCTCTAGAgccatttccagcggtgac pDW-rAf2
rprA53 CGGGATCCGCGGCCGCgagctaatagtaggcatacg pDW-rAf2
rprA35 CGGGATCCaacatttttccgcttcgctac pDW-rAf2
rprA33 GGGGTACCaatattggctgtcccaggtg pDW-rAf2
fnrS55 CGAGCTCcgttaaaccgctggaaaatac pDW-fSf2
fnrS53 TCCCCCCGGGaagagagatattgccctgaatg pDW-fSf2
fnrS35 GCTCTAGAtgcctgttatttatcagcgtc pDW-fSf2
fnrS33 GCATTAATcaaaacaccacgcaagagga pDW-fSf2
omrA55 GCTCTAGAtacccttgcagacgatcttc pDW-oAf2
omrA53 CGGGATCCGCGGCCGCggatcttgattgtggtctgc pDW-oAf2
omrA35 CGGGATCCcgcacctaatttactgtcgc pDW-oAf2
omrA33 GGGGTACCtggttttgatttcagccgcc pDW-oAf2
omrB55 GCTCTAGAatcattgagaacgcccatcg pDW-oBf2
omrB53 CGGGATCCGCGGCCGCggatcaccactttagcaacc pDW-oBf2
omrB35 CGGGATCCtgccggtcatcaatctgtaac pDW-oBf2
omrB33 GGGGTACCatttgcgataggagtctggg pDW-oBf2
Spf55 GCTCTAGAgatgatcaacccgaaaaccg pDW-sff2
Spf53 CGGGATCCGCGGCCGCgcgactaactttactcttttttg pDW-sff2
Spf35 CGGGATCCttgggcgaaaggaaagatcc pDW-sff2
Spf33 GGGGTACCcaaacaatcaaccgccatcag pDW-sff2
C1 SDM FOR tagagtagaaatttagctgttgtac pDW6-C1
C2 SDM FOR tagagtagaaagcaagctgttgtac pDW6-C2
C3 SDM FOR tagagtagaaaggcagctgttgtac pDW6-C3
C1, C2, C3 SDM REV ttcttagacgatgtaagttcacc pDW6-C1, pDW6-C2, pDW6-C3
C4 SDM FOR gtactatttaattttatattcataattaatg pDW6-C4
C4 SDM REV tgtacaacagcttcctttctactctattc pDW6-C4
C5 SDM FOR ttacgtgagttaaaaatggctaatg pDW6-C5
C5 SDM REV tcattaattatgaatat pDW6-C5
H1 SDM FOR acatcgtctaagaacggactagaaaggaagctg pDW6-H1
H1 SDM REV aagttcaccatattttttctc pDW6-H1
S1 SDM FOR ctatttaatggaatattcaAaattaatgattTgtgagtttccaatggc pDW6-S1
S1 SDM REV gccattggaaactcacAaatcattaattTtgaatattccattaaatag pDW6-S1
S2 SDM FOR ctatttaatggaatattcaATTttaatgaAATcgtgagtttccaatggc pDW6-S2
S2 SDM REV gccattggaaactcacgATTtcattaaAATtgaatattccattaaatag pDW6-S2
S3 SDM FOR ctatttaatggaatattcatGGtCaatgaCCacgtgagtttccaatggc pDW6-S3
S3 SDM REV gccattggaaactcacgtGGtcattGaCCatgaatattccattaaatag pDW6-S3
spf-S1 SDM FOR gaccttttacttcacAaatcggatttggctg pIB-spf-S1
spf-S1 SDM REV cagccaaatccgattTgtgaagtaaaaggtc pIB-spf-S1
spf-S2 SDM FOR accttttacttcacgATTtcggatttggctgaa pIB-spf-S2
spf-S2 SDM REV ttcagccaaatccgaAATcgtgaagtaaaaggt pIB-spf-S2
sepL-full used with below aaaaggatccgattgaggccttgttcaag
sepL-ATG ggggtaccatggtaccggtcgccaccatg pDW-sepL-ATG
sepL+6 ggggtaccgtaccggtcgccaccatggtg
sepL+9 ggggtaccccggtcgccaccatggtgagc
sepL+12 ggggtaccgtcgccaccatggtgagcaag
sepL+15 ggggtaccgccaccatggtgagcaagggc
sepL+18 ggggtaccaccatggtgagcaagggcgag
sepL+27 ggggtaccagcaagggcgaggagctgttc
sepL+30 ggggtaccaagggcgaggagctgttcacc
sepL+33 ggggtaccggcgaggagctgttcaccggg
sepL+36 ggggtaccgaggagctgttcaccggggtg
sepL+39 ggggtaccagctgttcaccggggtggtg
sepL+42 ggggtaccgttcaccggggtggtgccc
sepL+45 ggggtacccaccggggtggtgcccatc
sepL+48 ggggtaccgggtggtgcccatcctg
sepL+75 aaaaggtaccttctaattcaaaatctaatg
sepL+78 aaaaggtaccagattctaattcaaaatcta
sepL+81 ggggtaccaattaacgcaaaaaaattcttc
sepL+84 ggggtaccttaacgcaaaaaaattcttctaat
sepL+87 aaaaggtacctaattgctgagattctaatt
sepL+90 aaaaggtacccgttaattgctgagattcta
sepL+102 aaaaggtaccagaatttttttgcgttaattgc
sepL+123 aaaaggtacctaatggcgaagaaatattagaag
sepL+210 ggggtaccacctttgcgatatcccaggc