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. 2018 Mar 22;365(9):fny069. doi: 10.1093/femsle/fny069

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© FEMS 2018.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Placement of novel baetica genome in the genus Pseudomonas based upon ANI, and shared k-mers A) ANI heatmap generated the Python3 module pyani. The sequenced baetica genome, Pseudomonas_sp._Irchel_3E19 and reference genomes from the closely related koreensis subclade were subject to ANI analysis. B) A Mash-based tree generated from reference genomes (= 86) from 19 species clades, comprising the entire genus Pseudomonas. This tree was generated based upon the Jaccard index, calculated from shared k-mers. Cellvibrio japonicum Ueda107 was used as outgroup.