Table 2a.

List of prophage regions detected in the hybrid assembly.

Contig no.	Length	Completeness	Score	No. of proteins	Region position	Most common phage	GC %
1	6.7 Kbp	Questionable	70	6	681 684–688 458	PHAGE_Stx2_c_1717_NC_011357(3)	53.77%
2	6.5 Kbp	Incomplete	40	10	512 098–518 615	PHAGE_Entero_phi92_NC_023693(2)	60.11%
2	10.2 Kbp	Incomplete	30	8	742 363–752 628	PHAGE_Clostr_phiCT453A_NC_028991(3)	56.63%
2	5.5 Kbp	Incomplete	60	6	925 750–931 322	PHAGE_Stx2_c_1717_NC_011357(3)	54.15%
3	40.7 Kbp	Intact	150	48	383 269–424 017	PHAGE_Vibrio_VP882_NC_009016(12)	58.74%
3	57.2 Kbp	Intact	150	49	430 072–487 323	PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(8)	58.69%
4	35.1 Kbp	Intact	150	42	357 957–393 153	PHAGE_Pseudo_phiCTX_NC_003278(18)	57.32%
4	50.1 Kbp	Intact	150	70	564 492–614 686	PHAGE_Entero_Arya_NC_031048(10)	56.98%
5	21.3 Kbp	Incomplete	40	11	26 364–47 679	PHAGE_Pseudo_vB_PsyM_KIL1_NC_030934(6)	49.79%
5	8.7 Kbp	Incomplete	50	13	540 790–549 505	PHAGE_Bacill_BMBtpLA_NC_028748(1)	57.37%