Table 1.
Relative abundances of core OTUs for each population and life history stage. Average relative abundances of the 15 most abundant core taxa in order from highest to lowest abundance. The most abundant OTUs belonged to the genus Pseudomonas.
| Population | Life History Group | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| OTU_IDs | Taxonomy | East Bay | North Bay | Sierras | South Bay | Female | Male | Juvenile | Total |
| 295031, 333782, 750018, 106985*, 1566691*, 552449, 831401*, 277094*, 633252, 589597*, 541859*, 646549, 398604, 108909, 280459, 350105, 202466*, 780555, 669356, 4308187, 284090, 795272, 287032, 256834*, 561294, 279231, 817734, 813617, 142419, 764682, 563273, 560886, 143131, 557974*, 961783*, New.ReferenceOTU5461, New.ReferenceOTU2542, New.ReferenceOTU5608, New.ReferenceOTU152, New.ReferenceOTU3451, New.CleanUp.ReferenceOTU4174133 | Pseudomonas spp. | 0.214503 | 0.350475 | 0.322958 | 0.238365 | 0.360858 | 0.338676 | 0.393682 | 0.317074 |
| 4378239, 624310, 1090029, 732609, New.ReferenceOTU1497 | Sanguibacter spp. | 0.018133 | 0.044374 | 0.055253 | 0.05018 | 0.035045 | 0.036346 | 0.060483 | 0.042831 |
| 537279, 160115*, 544847 | Family Xanthomonadaceae | 0.034513 | 0.039326 | 0.025951 | 0.027777 | 0.030439 | 0.034771 | 0.052622 | 0.035057 |
| 338140, 544177, 829851*, 818602* | Family Pseudomonadaceae | 0.003024 | 0.015187 | 0.01669 | 0.008952 | 0.012721 | 0.015384 | 0.027199 | 0.014165 |
| 580625, 1105814 | Family Bradyrhizobiaceae | 0.007129 | 0.008705 | 0.008677 | 0.008268 | 0.010103 | 0.00941 | 0.00559 | 0.008269 |
| 884655, 1052559, 965129, 1003206 | Family Enterobacteriaceae | 0.00195 | 0.016151 | 0.006479 | 0.003776 | 0.00913 | 0.013283 | 0.003391 | 0.007737 |
| 1110763, 759061, New.ReferenceOTU3114 | Sphingomonas spp. | 0.012255 | 0.007255 | 0.00447 | 0.007523 | 0.007555 | 0.008393 | 0.006429 | 0.007697 |
| 459107*, 348790, 814909, 1108350 | Microbacterium spp. | 0.004407 | 0.006815 | 0.00197 | 0.00415 | 0.005389 | 0.005936 | 0.008436 | 0.0053 |
| 281220, 196652, New.ReferenceOTU2127 | Burkholderia spp. | 0.006198 | 0.002566 | 0.00769 | 0.002298 | 0.005364 | 0.002915 | 0.002531 | 0.004223 |
| 546342, 848824 | Family Sphingobacteriaceae | 0.003176 | 0.003793 | 0.004861 | 0.001178 | 0.005711 | 0.004923 | 0.004803 | 0.004064 |
| 533999*, 250626 | Luteibacter rhizovicinus | 0.004508 | 0.002413 | 0.00411 | 0.003469 | 0.005083 | 0.003806 | 0.002578 | 0.00371 |
| 876170, 279325, 1074625 | Family Microbacteriaceae | 0.006308 | 0.002527 | 0.003386 | 0.004333 | 0.003649 | 0.002999 | 0.0025 | 0.003672 |
| 391286 | Stenotrophomonas spp. | 0.000102 | 0.001893 | 0.006765 | 0.005451 | 0.001185 | 0.00115 | 0.001649 | 0.002599 |
| 1088265 | Erwinia spp. | 0.000729 | 0.002187 | 0.000463 | 0.002115 | 0.001834 | 0.008645 | 0.000482 | 0.00235 |
| 581021 | Propionibacterium acnes | 0.004875 | 0.002233 | 0.001343 | 0.004118 | 0.002147 | 0.000796 | 0.00043 | 0.002277 |
*
indicates an OTU with previously-documented antifungal properties. Complete taxonomy and remaining OTUs are presented in Supplementary Table 2.