Table 1.
Top 20 differentially expressed genes according to descending Q values for PCI vs. ShamN and ShamI vs. ShamN respectively. The values were obtained as a result of the differential expression pairwise tests in edgeR. Table was generated using by edgeR_3.12.1.
| Top 20 Genes for ShamI vs. ShamN | Top 20 Genes for PCI vs. ShamN | ||||||
|---|---|---|---|---|---|---|---|
| ID | Gene Name | logFC | Q value | ID | Gene Name | logFC | Q value |
| Pde6h | phosphodiesterase 6H | −2.279 | 1.31E-10 | Spp1 | secreted phosphoprotein 1 | 4.780 | 1.92E-16 |
| Nckap 1l | NCK associated protein 1 like | 3.563 | 1.84E-07 | Mrpl43 | mitochondrial ribosomal protein L43 | 7.822 | 2.32E-15 |
| Rassf4 | Ras association domain family member 4 | 1.817 | 1.02E-06 | Top2a | topoisomerase (DNA) II alpha | 4.359 | 1.03E-13 |
| Txnip | thioredoxin interacting protein | 2.312 | 1.40E-06 | Alcam | activated leukocyte cell adhesion molecule | 2.529 | 1.03E-13 |
| RT1-Da | RT1 class II, locus Da | 4.833 | 4.25E-06 | Gpnmb | glycoprotein nmb | 4.443 | 1.36E-12 |
| Mpeg1 | macrophage expressed 1 | 3.683 | 5.02E-06 | Mki67 | marker of proliferation Ki-67 | 4.818 | 3.92E-12 |
| Tifab | TIFA inhibitor | 4.009 | 7.02E-06 | RT1-DMb | RT1 class II, locus DMb | 4.524 | 4.68E-12 |
| Arr3 | arrestin 3 | −2.146 | 1.58E-05 | Cenpf | centromere protein F | 4.224 | 6.16E-11 |
| Fcgr2b | Fc fragment of IgG, low affinity IIb, receptor | 10.693 | 1.58E-05 | Rassf4 | Ras association domain family member 4 | 2.172 | 1.66E-10 |
| Bin2 | bridging integrator 2 | 4.106 | 2.62E-05 | Alox5ap | arachidonate 5-lipoxygenase activating protein | 3.042 | 1.09E-09 |
| Mlf1 | myeloid leukemia factor 1 | 2.064 | 2.62E-05 | Ctsz | cathepsin Z | 4.345 | 3.04E-09 |
| Ctss | cathepsin S | 2.042 | 2.95E-05 | Vim | vimentin | 2.490 | 3.28E-09 |
| Laptm5 | lysosomal protein transmembrane 5 | 4.315 | 3.81E-05 | Pdpn | podoplanin | 2.526 | 2.68E-08 |
| Csf1r | colony stimulating factor 1 receptor | 3.103 | 3.84E-05 | Ptafr | platelet-activating factor receptor | 5.885 | 2.69E-08 |
| Gadd45g | growth arrest and DNA-damage-inducible, gamma | 1.882 | 3.84E-05 | Lmna | lamin A/C | 2.529 | 3.31E-08 |
| Clec4a1 | C-type lectin domain family 4, member A1 | 8.195 | 5.45E-05 | Cd44 | CD44 molecule (Indian blood group) | 4.005 | 3.70E-08 |
| Aif1 | allograft inflammatory factor 1 | 3.743 | 5.45E-05 | Mlf1 | myeloid leukemia factor 1 | 2.165 | 3.70E-08 |
| Mt2A | metallothionein 2A | 2.500 | 6.77E-05 | Lipa | lipase A, lysosomal acid type | 1.702 | 3.70E-08 |
| Ncf1 | neutrophil cytosolic factor 1 | 6.501 | 7.23E-05 | Ncf1 | neutrophil cytosolic factor 1 | 7.056 | 5.80E-08 |
| Apobec1 | apolipoprotein B mRNA editing enzyme catalytic subunit 1 | 4.109 | 0.000115 | Arpc1b | actin related protein 2/3 complex, subunit 1B | 3.784 | 5.92E-08 |