Table 2.
Sample description by genotype.
| Number of samples (atypical MVST) | |
|---|---|
| HMTG PROFILE | |
| – | 5 (4) |
| merA | 3 (2) |
| merA,pcoA,pcoD,silA,silE | 23 (4) |
| pcoA,pcoD,silA,silE | 20 (0) |
| pcoA,pcoD,silA,silE, terF | 1 (0) |
| AMR PROFILE | |
| blaTEM-1B,strA,strB,sul2,tet(B) | 28 (4) |
| tet(B) | 6 (1) |
| – | 5 (2) |
| aac(3)-IVa-like,aph(4)-Ia,blaTEM-1B,floR-like,strA,strB,sul2,tet(B),tet(C) | 2 (0) |
| aac(3)-IVa-like,aph(4)-Ia,blaTEM-1B-like,blaTEM-1C-like,mcr-1-like,strA,strB,sul2,sul3,tet(A)-like,tet(B) | 1 (0) |
| aadA1-like,aadA2,blaTEM-1B,cmlA1-like,dfrA12,strA,strB,sul2,sul3,tet(B) | 1 (0) |
| aadA1,aadA2,blaTEM-1B,cmlA1-like,dfrA12,strA,strB,sul2,sul3,tet(A) | 1 (1) |
| aadA1,blaTEM-1B,dfrA1,strA,strB,sul1,sul2,tet(A)-like | 1 (1) |
| aph(3′)-Ia,blaTEM-1B,tet(B) | 1 (1) |
| blaTEM-1B,dfrA14-like,strA-like,strB,sul2-like,tet(A),tet(B) | 1 (0) |
| blaTEM-1B,floR-like,strA,strB,sul2-like,tet(B) | 1 (0) |
| blaTEM-1B,strA-like,strB,sul2,tet(B) | 1 (0) |
| blaTEM-1B,strA,strB,sul2 | 1 (0) |
| blaTEM-1B,strA,strB,sul2,tet(B),floR-like | 1 (0) |
| blaTEM-1B,tet(B),floR-like | 1 (0) |
| REPLICON PROFILE | |
| Col(BS512),Col(VCM04),IncQ1,ColpVC,ColRNAI | 1 (0) |
| Col(VCM04),ColRNAI | 1 (0) |
| Col(VCM04),IncQ1,ColRNAI | 1 (0) |
| Col(VCM04),IncQ1,ColRNAI,IncFIB(AP001918),IncFIC(FII),IncHI2A,IncHI2 | 1 (0) |
| ColpVC | 1 (0) |
| ColpVC,ColRNAI,Col156 | 1 (0) |
| ColRNAI | 1 (0) |
| ColRNAI,Col156,ColE10,IncFIC(FII),IncI1,IncFIB(pB171) | 1 (1) |
| IncFIA,IncFIB(AP001918) | 1 (1) |
| IncFIB(S),IncFII(S) | 1 (0) |
| IncFIB(S),IncFII(S),IncFII | 1 (1) |
| IncFIB(S),IncFII(S),IncX4,IncFII | 1 (1) |
| IncQ1 | 8 (1) |
| IncQ1,ColRNAI | 13 (2) |
| IncQ1,ColRNAI,Col156 | 6 (0) |
| IncQ1,ColRNAI,Col156,Col8282 | 1 (0) |
| IncQ1,ColRNAI,Col156,IncI1 | 1 (0) |
| IncQ1,ColRNAI,ColE10 | 1 (0) |
| IncQ1,ColRNAI,IncFIB(S),IncFII(S),IncFII | 1 (1) |
| IncQ1,ColRNAI,IncFII | 1 (0) |
| IncQ1,ColRNAI,IncI1 | 1 (1) |
| IncQ1,IncI1 | 2 (0) |
| IncQ1,IncN | 1 (1) |
| IncQ1,IncX1 | 1 (0) |
| p0111 | 1 (0) |
| – | 2 (0) |
| TA PROFILE | |
| rel,fic,vap,hig,phd-doc,rel/par | 46 (6) |
| rel,fic,vap,hig,phd-doc,rel/par,ccd,let | 2 (1) |
| rel,fic,vap,hig,phd-doc,rel/par,ccd,maz,ccd/rel,stborf2 | 3 (3) |
| rel,fic,vap,hig,phd-doc,rel/par,vag, hip | 1 (0) |
Heavy metal tolerance (HMT) profile, replicon profile, antimicrobial resistance (AMR) profile, toxin-antitoxin (TA) profile and the corresponding number of strains in which they were found. Numbers in brackets refer to the number of atypical monophasic variants in the group. All 50 the analyzed strains and the two reference genomes (LN999997 and LT2) are included.