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. 2017 Nov 28;69(9):2379–2390. doi: 10.1093/jxb/erx404

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© The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Unrooted phylogenetic tree of the CAROTENOID CLEAVAGE DIOXYGENASE (CCD) gene family. Only full-length members of the family are included. The predicted sequences were aligned using ClustalW in Geneious (version 10). Phylogenetic relationships were calculated using the maximum-likelihood principle, and bootstrap values with 500 replicates were determined using Geneious. The scale bar is the number of substitutions per site. Accession numbers for the sequences are as follows: Actinidia chinensis AcCCD7 (ADP37985.1), AcCCD8 (ADP37984.1); Arabidopsis thaliana AtCCD1 (AT3G63520), AtCCD4 (AT4G19170), AtCCD7 (AT2G44990.1), AtCCD8 (AT4G32810); Brassica oleracea BoCCD7 (XP_013635602.1), BoCCD8 (XP_013589279.1); Fragaria vesca FvCCD7 (XP_004306976.2), FvCCD8 (XP_011458989.1); Malus×domestica MdCCD7 (MF034498), MdCCD8a (XP_008378214.1), MdCCD8b (XP_008352014.1); Oryza sativa OsCCD7 (LOC_Os04g46470.1), OsCCD8 (XP_015642760.1); Petunia×hybrida PhCCD7 (ACY01408.1), PhCCD8 (AAW33596.1); Pisum sativum PsCCD7 (ABD67496.2), PsCCD8 (AAS66906.1); Populus trichocarpa PtCCD7 (XP_006375244.1), PtCCD8 (XP_002324797.1); Prunus persica PpCCD7 (XP_007221108.1), PpCCD8 (XP_007222386.2); Pyrus communis PcCCD7 (PCP005718), PcCCD8 (PCP000841); Vitis vinifera VvCCD7 (XP_002274198.1), VvCCD8 (XP_002281239.2).