Table 2:

Summary of protein identifications and differentially expressed proteins in the three TMT 10 plexes

	TMT1 (WB-MTZR V MTZS)	TMT2 (106-MTZR V MTZS)	TMT2 (713-MTZR V MTZS)
No. of protein IDs	1220	1126	1060
No. of nonredundant peptides	9684	8692	6349
No. of differentially expressed proteins	264	171	76
No. of upregulated proteins	128	87	39
No. of downregulated proteins	137	84	37

Proteins were considered differentially expressed if proteins were statistically significant (P value ≤ 0.05) and met ratio fold change cutoffs for upregulation (≥1.3) or downregulation (≤0.77).