Table II.
Comparison of avocado NCED genes and their encoded proteins
Properites | PaNCED1 | PaNCED2 | PaNCED3 |
---|---|---|---|
GenBank accession no. | AF224672 | AF224670 | AF224671 |
Total message length (bp) | 2,153 | 1,967 | 2,310 |
3′-Untranslated region (bp) | 377 | 226 | 388 |
5′-Untranslated region (bp) | 66 | 166 | 44 |
Total coding bases (bp) | 1,710 | 1,575 | 1,878 |
No. of amino acids | 569 | 524 | 625 |
Predicted molecular mass (kD) | 63.1 | 59.6 | 69.7 |
Percent of identity to VP14a | 63 | 29 | 61 |
pI | 7.4 | 9.0 | 8.2 |
Induction during ripening | Yes | No | Yes |
Induction during wilting | Yes | No | No |
Predicted chloroplast transit peptideb | Yes | No | Yes |
In vitro ability to produce xanthoxin | Yes | No | Yes |
At the amino acid level.
Based on the predictions of ChloroP (Emanuelsson et al., 1999).