Table 1. Small RNA reads from three stages of chicken embryonic development.
| Samples | Total Read | Clean Read | Genome | mRNA | Mature miRBase | Rfam | RepBase | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Aligned | Align % | Aligned | Align % | Aligned | Align % | Aligned | Align % | Aligned | Align % | |||
| E11.1 | 6234650 | 5302700 | 4714228 | 0.889 | 760139 | 0.1433 | 251039 | 0.0473 | 2544533 | 47.99% | 371370 | 7.00% |
| E11.2 | 7925493 | 6556747 | 5728266 | 0.8736 | 1098490 | 0.1675 | 475303 | 0.0725 | 2103428 | 32.08% | 492592 | 7.51% |
| E16.1 | 6512809 | 5359793 | 4816010 | 0.8985 | 693860 | 0.1295 | 965511 | 0.1801 | 1307022 | 24.39% | 273784 | 5.11% |
| E16.2 | 6759531 | 4213112 | 3951219 | 0.9378 | 976328 | 0.2317 | 783613 | 0.186 | 745809 | 17.70% | 439813 | 10.44% |
| P1.1 | 8992944 | 7112885 | 6611002 | 0.9294 | 805593 | 0.1133 | 2145731 | 0.3017 | 1011044 | 14.21% | 386789 | 5.44% |
| P1.2 | 8872577 | 7469939 | 6983250 | 0.9348 | 1330233 | 0.1781 | 1836149 | 0.2458 | 848175 | 11.35% | 421541 | 5.64% |