Table 2. KEGG pathway analysis of differentially expressed up and down regulated gene (fold change > 1.75) in three contrast groups, (E11_VS_E16, E11_VS_P1, E16_VS_P1).
| Contrast group |
Pathway | Count | P-value | q-value |
|---|---|---|---|---|
| E11_VS_E16 | Glycolysis/Gluconeogenesis | 3 | 3.28E-05 | 5.97E-06 |
| Calcium signaling pathway | 4 | 4.79E-05 | 7.98E-06 | |
| Glyoxylate and dicarboxylate metabolism | 2 | 1.10E-04 | 1.63E-05 | |
| Reductive carboxylate cycle (CO2 fixation) |
2 | 1.10E-04 | 1.63E-05 | |
| Oxidative phosphorylation | 3 | 5.09E-04 | 5.66E-05 | |
| Citrate cycle (TCA cycle) | 2 | 6.43E-04 | 6.76E-05 | |
| Pyruvate metabolism | 2 | 9.75E-04 | 9.75E-05 | |
| Cysteine metabolism | 1 | 0.011454 | 9.54E-04 | |
| E11_VS_P1 | Citrate cycle (TCA cycle) | 6 | 3.65E-12 | 2.44E-12 |
| Pyruvate metabolism | 5 | 2.10E-09 | 8.41E-10 | |
| Glycolysis / Gluconeogenesis | 5 | 9.91E-09 | 3.30E-09 | |
| Oxidative phosphorylation | 5 | 1.06E-06 | 2.12E-07 | |
| Butanoate metabolism | 3 | 1.12E-05 | 1.67E-06 | |
| Wnt signaling pathway | 4 | 5.15E-05 | 5.72E-06 | |
| Valine, leucine and isoleucine biosynthesis | 2 | 5.77E-05 | 6.07E-06 | |
| Cysteine metabolism | 2 | 7.68E-05 | 7.31E-06 | |
| Propanoate metabolism | 2 | 7.44E-04 | 5.51E-05 | |
| Calcium signaling pathway | 3 | 0.001658 | 1.08E-04 | |
| MAPK signaling pathway | 3 | 0.004502 | 2.43E-04 | |
| Apoptosis 2 | 2 | 0.005367 | 2.75E-04 | |
| E16_VS_P1 | Citrate cycle (TCA cycle) | 5 | 7.51E-12 | 6.14E-12 |
| Glycolysis / Gluconeogenesis | 4 | 2.40E-08 | 1.20E-08 | |
| Pyruvate metabolism | 3 | 1.57E-06 | 4.49E-07 | |
| Cysteine metabolism | 2 | 1.38E-05 | 2.75E-06 | |
| Oxidative phosphorylation | 3 | 6.24E-05 | 1.04E-05 | |
| Arginine and proline metabolism | 2 | 1.71E-04 | 2.44E-05 | |
| Glycine, serine and threonine metabolism |
2 | 2.89E-04 | 3.85E-05 | |
| Alkaloid biosynthesis I ___ | 1 | 0.004309 | 4.42E-04 | |
| Nucleotide sugars metabolism | 1 | 0.004309 | 4.42E-04 | |
| Valine, leucine and isoleucine biosynthesis |
1 | 0.005025 | 4.79E-04 | |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
1 | 0.006457 | 5.61E-04 | |
| Glyoxylate and dicarboxylate metabolism |
1 | 0.007886 | 6.31E-04 | |
| Reductive carboxylate cycle (CO2 fixation) |
1 | 0.007886 | 6.31E-04 | |
| Pentose and glucuronate inter conversions | 1 | 0.0086 | 6.37E-04 |