Skip to main content
. Author manuscript; available in PMC: 2018 Apr 24.
Published in final edited form as: Nat Genet. 2008 May;40(5):560–566. doi: 10.1038/ng.124

Figure 2.

Figure 2

Identified discrepancies between rat genome assembly and genetic maps. Rearrangement of the physical map according to genetic mapping information. Data from each cohort are color coded (red: FXLE-LEXF, green: HXB-BXH, blue: GKxBN). Black lines: all crosses support this rearrangement; lime green: HXB-BXH and F2 cross support this rearrangement. Orange lines indicate unresolved genomic conflicts. The outer circle marks positions of informative SNPs for each cohort. Arrows indicate the relocation of SNP markers that had extreme genetic distances compared to their physical distance from adjacent markers. Markers were relocated according to minimal recombination fraction. Conflicts in the genetic map are marked by bars in the inner circle.