Table 3.
Mean nt substitution rate (nt/site/year) and 95% HPD of each of the genome regions.
| Mean nucleotide/substitution/site/year (95% HPD) | ||||||
|---|---|---|---|---|---|---|
| Region 1 | Region 2 | Region 3 | Region 7 | Region 8* | Region 9* | |
| A/Sea-97 | 6.29 × 10−3 | 6.58 × 10−3 | 5.04 × 10−3 | 4.96 × 10−3 | 5.58 × 10−3 | 5.82 × 10−3 |
| (4.84 × 10−3, 7.81 × 10−3) | (5.07 × 10−3, 8.18 × 10−3) | (3.48 × 10−3, 6.72 × 10−3) | (3.73 × 10−3, 6.39 × 10−3) | (4.01 × 10−3, 7.28 × 10−3) | (3.70 × 10−3, 8.0354 × 10−3) | |
| O/Mya-98(A) | 6.31 × 10−3 | 6.26 × 10−3 | 5.00 × 10−3 | 4.78 × 10−3 | 5.56 × 10−3 | 5.72 × 10−3 |
| (4.78 × 10−3, 7.81 × 10−3) | (4.92 × 10−3, 7.72 × 10−3) | (3.49 × 10−3, 6.64 × 10−3) | (3.34 × 10−3, 6.30 × 10−3) | (3.80 × 10−3, 7.30 × 10−3) | (3.57 × 10−3, 8.25 × 10−3) | |
| O/Mya-98(B) | 6.41 × 10−3 | 6.18 × 10−3 | 5.07 × 10−3 | 4.90 × 10−3 | 5.47 × 10−3 | 5.99 × 10−3 |
| (4.86 × 10−3, 8.076 × 10−3) | (4.78 × 10−3, 7.61 × 10−3) | (3.51 × 10−3, 6.82 × 10−3) | (3.40 × 10−3, 6.60 × 10−3) | (3.72 × 10−3, 7.33 × 10−3) | (3.59 × 10−3, 8.65 × 10−3) | |
| O/PanAsia | 6.09 × 10−3 | 6.35 × 10−3 | 5.03 × 10−3 | 4.82 × 10−3 | 5.28 × 10−3 | 5.59 × 10−3 |
| (4.81 × 10−3, 7.44 × 10−3) | (5.17 × 10−3, 7.63 × 10−3) | (3.51 × 10−3, 6.70 × 10−3) | (3.58 × 10−3, 6.23 × 10−3) | (3.80 × 10−3, 6.93 × 10−3) | (3.55 × 10−3, 7.75 × 10−3) | |
| As1/Gr-V | 5.66 × 10−3 | 5.40 × 10−3 | 4.99 × 10−3 | 3.88 × 10−3 | 4.64 × 10−3 | 5.35 × 10−3 |
| (4.03 × 10−3, 7.46 × 10−3) | (3.79 × 10−3, 6.96 × 10−3 | (3.38 × 10−3, 6.67 × 10−3) | (2.40 × 10−3, 5.40 × 10−3) | (2.85 × 10−3, 6.50 × 10−3) | (2.99 × 10−3, 7.91 × 10−3) | |
| O/CATHAY | 5.94 × 10−3 | 5.64 × 10−3 | 5.05 × 10−3 | 4.46 × 10−3 | 5.13 × 10−3 | 5.63 × 10−3 |
| (4.20 × 10−3, 7.85 × 10−3) | (4.04 × 10−3, 7.32 × 10−3) | (3.42 × 10−3, 6.79 × 10−3) | (2.73 × 10−3, 6.19 × 10−3) | (3.10 × 10−3, 7.12 × 10−3) | (3.24 × 10−3, 8.20 × 10−3) | |
| All lineages | 5.88 × 10−3 | 6.52 × 10−3 | 5.02 × 10−3 | 4.29 × 10−3 | 5.00 × 10−3 | 5.44 × 10−3 |
| (4.70 × 10−3, 7.08 × 10−3) | (4.85 × 10−3, 8.40 × 10−3) | (3.47 × 10−3, 6.64 × 10−3) | (3.22 × 10−3, 5.38 × 10−3) | (3.60 × 10−3, 6.44 × 10−3) | (3.54 × 10−3, 7.32 × 10−3) | |
For regions 8 and 9, the sequence KT968663 (A/HY/CHA/2013) was included in the monophyletic clade of Mya-98(B) lineage for the computation of the clade specific rate.