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. 2018 Apr 19;9:508. doi: 10.3389/fpls.2018.00508

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Copyright © 2018 Malmberg, Shi, Spangenberg, Daetwyler and Cogan.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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(A) Annotation of c. 4 million WGR discovered high-confidence SNPs using SnpEff. Green regions represent non-coding genic regions and synonymous substitutions, while red regions represent non-synonymous substitutions and the loss or gain of stop/start codons. (B) Annotation of structural variants in 134 samples using the Darmor-bzh gff3 file. Deletions and insertions were annotated based on overlap with intergenic regions or genic regions, sub-divided into intron, CDS, and UTR, and overlapping both CDS and UTR.