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. 2018 Apr 26;14(4):e1006991. doi: 10.1371/journal.ppat.1006991

Table 3. Probabilities of randomness of the observed amino acid enrichment in selected internal or flanking positions of HLA-B*08:01 epitopes.

Nomenclature of positions is as in Fig 8. Probabilities (p) were calculated by Fisher's exact test. No correction for multiple testing was performed.

position amino acid occurrence in epitopes occurrence in non-epitopes   p
N7 L 6 28 0.0048
  other 10 255    
C1 L 12 108 0.0067
  other 4 175    
N2' K 4 14 0.0107
  other 12 269    
N2' RKH 6 35 0.0129
  other 10 248    
N2' RKHCSTNQ 13 108 0.0010
  other 3 175    
N1' E 4 13 0.0086
  other 12 270    
C1' S 6 22 0.0016
  other 10 261    
C1' CSTNQ 10 59 0.0006
  other 6 224    
C1' RKHCSTNQ 12 104 0.0032
  other 4 179    
C2' K 5 13 0.0013
  other 11 270    
C2' RKH 7 39 0.0050
  other 9 244