Table 1. Genome assembly metrics.
| ALLPATHS-LG Assembly | PLATANUS Assembly | ALLPATHS-LG + GapCloser | ||
|---|---|---|---|---|
| Scaffold | Total length (bp) | 157,408,176 | 146,937,509 | 157,284,427 |
| Number | 1,538 | 16,684 | 1,536 | |
| N50 length (bp) | 806,518 | 187,271 | 805,959 | |
| Longest scaffold (bp) | 7,037,412 | 2,341,668 | 7,038,285 | |
| Gap size (bp) | 18,606,682 | 26,830,789 | 8,276,177 | |
| Contig | Total length (bp) | 138,806,556 | 120,116,579 | 149,009,524 |
| Number | 14,076 | 37,240 | 7,472 | |
| N50 length (bp) | 25,949 | 4,905 | 48,580 | |
| Longest contig (bp) | 417,030 | 70,238 | 788,128 | |
| BUSCO | Total complete | 87.80% | 77.20% | 89.80% |
| Single copy complete | 86.20% | 75.90% | 88.00% | |
| Duplicated complete | 1.60% | 1.30% | 1.80% | |
| Fragmented | 3.50% | 7.90% | 2.20% | |
| Missing | 8.70% | 14.90% | 8.00% | |
| Total number | 1440 | 1440 | 1440 |