Table 2. Prediction ability for six curd-related traits with different data sets using GBLUP.
| Imputed Data | |||||
|---|---|---|---|---|---|
| Trait | Unimputed Data | BEAGLE | fastPHASE | Corrected | Mean |
| Curd Width | 0.38 | 0.45 | 0.45 | 0.45 | 0.43 |
| Cluster Width | 0.62 | 0.65 | 0.65 | 0.59 | 0.63 |
| Number of Branches | 0.34 | 0.38 | 0.38 | 0.31 | 0.35 |
| Apical Length | 0.13 | 0.13 | 0.14 | 0.08 | 0.12 |
| Nearest Branch | 0.22 | 0.27 | 0.28 | 0.21 | 0.25 |
| Number of Days | 0.63 | 0.63 | 0.64 | 0.39 | 0.57 |
| Mean | 0.39 | 0.42 | 0.42 | 0.34 | 0.39 |
Unimputed: prediction ability using 675 SNPs. Imputed: prediction ability using BEAGLE and fastPHASE imputed data. Corrected: prediction ability for the GBLUP model with a realized relationship matrix corrected for population structure.