Table 1. List of the genomes used in real data scenarios.

Genome ID	Major Population Division	Depth	Reference
HG01923	Peruvian (PEL)	6.3×	Altshuler et al. (2010)
HG01974	Peruvian (PEL)	11.9×	Altshuler et al. (2010)
HG02150	Peruvian (PEL)	7.3×	Altshuler et al. (2010)
HG02259	Peruvian (PEL)	6.5×	Altshuler et al. (2010)
HG02266	Peruvian (PEL)	3.8×	Altshuler et al. (2010)
NA18526	Han Chinese (CHB)	6.6×	Altshuler et al. (2010)
NA18532	Han Chinese (CHB)	7.3×	Altshuler et al. (2010)
NA18537	Han Chinese (CHB)	2.9×	Altshuler et al. (2010)
NA18542	Han Chinese (CHB)	7.3×	Altshuler et al. (2010)
NA18545	Han Chinese (CHB)	6.2×	Altshuler et al. (2010)
NA06985	CEPH (CEU)	12.8×	Altshuler et al. (2010)
NA06994	CEPH (CEU)	5.5×	Altshuler et al. (2010)
NA07000	CEPH (CEU)	9.4×	Altshuler et al. (2010)
NA07056	CEPH (CEU)	4.9×	Altshuler et al. (2010)
NA07357	CEPH (CEU)	5.7×	Altshuler et al. (2010)
NA12778	CEPH (CEU)	6.9×	Altshuler et al. (2010)
NA18501	Yoruba (YRI)	6.4×	Altshuler et al. (2010)
NA18502	Yoruba (YRI)	4.9×	Altshuler et al. (2010)
NA18504	Yoruba (YRI)	10.1×	Altshuler et al. (2010)
NA18505	Yoruba (YRI)	6.1×	Altshuler et al. (2010)
NA18507	Yoruba (YRI)	3×	Altshuler et al. (2010)
HGDP00778	Han Chinese (CHB)	23.4×	International HapMap Consortium (2003)
DNK02	Dinka	25.8×	Meyer et al. (2012)
HGDP00927	Yoruban (YRI)	28×	International HapMap Consortium (2003)
AltaiNea	Neandertal	44.9×	Green et al. (2010)
pantro2	Chimpanzee	—	Kent et al. (2002)
saqqaq	Saqqaq	15.7×	Rasmussen et al. (2010)
MARC1492	Ancient Canadian Dorset	1.1×	Raghavan et al. (2014)
	(Mi’kmaq—New England)
HGDP00521	French	23.8×	International HapMap Consortium (2003)

CEPH

Utah Resident with Northern and Western European Ancestry