Table 2. Sequence comparison of sample sequencing data with the selected reference genome.
| Sample | Total reads | Mapped reads | Uniq mapped reads | Multiple mapped reads | Reads map to ‘+’ | Reads map to ‘–’ |
|---|---|---|---|---|---|---|
| 67460493 | 63602603 | 3857890 | 34794402 | 32666091 | ||
| H1 | 82929752 | (81.35%) | (94.28%) | (5.72%) | (41.96%) | (39.39%) |
| 54271781 | 51334082 | 2937699 | 28090839 | 26180942 | ||
| H2 | 67046322 | (80.95%) | (94.59%) | (5.41%) | (41.90%) | (39.05%) |
| 65034922 | 61540449 | 3494473 | 33600115 | 31434807 | ||
| H3 | 79151226 | (82.17%) | (94.63%) | (5.37%) | (42.45%) | (39.71%) |
| 70080879 | 65899898 | 4180981 | 36079700 | 34001179 | ||
| L5 | 85707326 | (81.77%) | (94.03%) | (5.97%) | (42.10%) | (39.67%) |
| 59625107 | 56228566 | 3396541 | 30705660 | 28919447 | ||
| L7 | 72614352 | (82.11%) | (94.30%) | (5.70%) | (42.29%) | (39.83%) |
| 72211452 | 67737688 | 4473764 | 37246343 | 34965109 | ||
| L8 | 89201344 | (80.95%) | (93.80%) | (6.20%) | (41.76%) | (39.20%) |