PCR-confirmed active yaws refers to samples with positive results in either tpN47 (tp0574) or tp0548, and in which the pertenue subspecies was confirmed by TprL PCR amplicon size.
*A random sample of 90 (out of 690) clinically suspected yaws cases at baseline and 84 (out of 121) at 6 months were tested by PCR; we provide data on the characteristics of lesions that were actually PCR-positive among the subset of PCR-tested lesions (31 at baseline and 41 at 6-months). In 12-month to 42-month surveys, we tested all clinically suspected lesions by PCR; therefore we provide data on the characteristics of all lesions detected for these time-points.
†Not all T. p. pertenue positive samples could be fully typed for all three typing targets.
§ P<0.0001 for the estimate of the mean evolutionary diversity of T. p. pertenue isolates at 24-month survey compared to baseline.
¶ Estimate of the mean evolutionary diversity of T. p. pertenue isolates at each round.
‡Not all T. p. pertenue positive samples could be amplified for 23S rRNA by PCR.