Table.
Overview of detected GII.17 norovirus strains worldwide, 1978–2015
| Country | Geographical spread GII.17a |
Yearb | ORF1 | ORF2 | Study population | Proportions of typed strains or outbreaksc |
Suspected source of infection |
Description of the sequence (size) |
Accession number |
References |
|---|---|---|---|---|---|---|---|---|---|---|
| French Guiana | Single location | 1978 | GII.P4 | GII.17 | Children with AGE | 1 strain | – | Partial genome (7,441 bp) | KC597139, JN699043 | [14] |
| Brazil | Rio de Janeiro | 1997 (1994–2008) | – | GII.17 | Children with AGE | 3/52 strains | – | 5’-end ORF2 (300 bp) | JN600531 | [31] |
| Kenya | Nairobi | 1999–2000 | – | GII.17 | HIV positive children with or without AGE | 1/11 strains | – | 5’-end ORF2 (309 bp) | KF279387 | [32] |
| France | Briançon | 2004 | GII.P13 | GII.17 | Child with AGE | 1 strain | – | Partial ORF1/2 (1,361 bp) | EF529741 | Data not shown |
| Paraguay | Asuncion | 2004–2005 | – | GII.17 | AGE in children (<5 years) | 5/29 strains | – | 3’-end ORF2 (255 bp) | KC736582, KC736580, KC736578, KC736569 | [33] |
| Brazil | States of Acre (Brazil) | 2005 (2005–2009) | – | GII.17 | AGE | 2/62 strains | – | 3’-end ORF2 (215 bp) | JN587118 JN587117 | [34] |
| United States | Houston | 2005 | – | GII.17 | AGE evacuees hurricane Katrina | Predominant genotype in an outbreak | Sewage | ORF2 and 3 (2,459 bp) | DQ438972 | [35] |
| Argentina | Single location (Argentina) | 2005–2006 | – | GII.17 | River samples | 1/33 strains | – | – | – | [36] |
| Brazil | State of Rio de Janeiro | 2005–2006 (2004–2011) | – | GII.17 | Outbreaks of AGE | 3/112 outbreaks | – | 3’-end ORF2 (214 bp) | KJ179752, KJ179753, KJ179754 | [37] |
| Nicaragua | Léon | 2005–2006 | – | GII.17 | AGE | 1 strain | – | 5’-end ORF2 (244 bp) | EU780764 | [26] |
| France | Sommières | 2006 | GII.P13 | GII.17 | AGE | 1 strain | Foodborne | Partial ORF1/2 (1,056 bp) | EF529742 | Data not shown |
| Thailand | Lopburi | 2006–2007 | – | GII.17 | AGE | 2 strains | – | 5’-end ORF2 (209 bp) | GQ325666, GQ325670, | [38] |
| China | Wuhan | 2007 (2007–2010) | GII.P13 | GII.17 | AGE | 1/488 strains | – | Partial ORF1/2 (1,096 bp) | JQ751044 | [39] |
| Mexico | Mexico City | 2007 | – | GiI.17 | – | – | Waterborne | 5’-end ORF2 (1,337 bp) | JF970609 | NCBId |
| Switzerland | Zürich | 2008 | – | GII.17 | Renal transplant patient | 1/9 strains | – | ORF2 (1,599 bp) | GQ266696 | [15] |
| Nicaragua | Léon | 2008 | – | GII.17 | AGE in children (<5 years) | 2/38 strains | – | 5’-end ORF2 (244 bp) | EU780764 | [40] |
| South Korea | Seoul | 2010 (2008–2011) | – | GII.17 | AGE | 1/710 strains | – | 5’-end ORF2 (209) | JQ944348 | [41] |
| Brazil | Quilombola | 2009 (2008–2010) | – | GII.17 | Children (<10 years) | 2/16 strains | – | 3’-end ORF2 (215 bp) | JX047021, JX047022 | [42] |
| Cameroon | Southwestern region of Cameroon | 2009 | GII.P13 | GII.17 | Healthy children and HIV positive adults | 4/15 strains | – | Partials ORF1/2 (1,024 bp) | JF802504–JF802507 | [43] |
| Guatemala | Tecpan | 2009 | – | GII.17 | Children after waterborne outbreak | 1/18 strains | Waterborne | – | – | [44] |
| Burkina Faso | Ouagadougou | 2009–2010 | – | GII.17 | AGE in children (<5 years) | 1/36 strains | – | 5’-end ORF2 (287 bp) | JX416405 | [27] |
| Netherlands | Single location | 2002–2007 | – | GII.17 | Nosocomial | 3/264 strains | Nosocomial | – | – | [45] |
| South Korea | South Korea | 2010 | – | GII.17 | Groundwater samples | 2/7 strains | – | 5’-end ORF2 (311 bp) | KC915021–KC915022 | [18] |
| Ireland | Ireland | 2010 | – | GII.17 | Influent waste water | 4/24 strains | – | 5’-end (302 bp) | JQ362530 | [46] |
| South Africa | South Africa | 2010–2011 | – | GII.17 | Waste water | 9/69 strains | – | 5’-end ORF2 (305 bp) | KC495680, KC495686, KC495672–KC495674, KC495664, KC495657, KC495655, KC495640 | [47] |
| South Korea | Jinhae Bay | 2010–2011 | – | GII.17 | Oysters | 1 strain | – | – | – | [48] |
| Morocco | Oujda (Morocco) | 2011 | – | GII.17 | AGE in children (<5 years) | 1/42 strains | – | 5’-end (205 bp) | KJ162374 | [49] |
| South Africa | Johannesburg (South Africa) | 2011 | GII.P16 | GII.17 | AGE | – | Partial ORF1/2 (1,010 bp) | KC962460 | [50] | |
| Cameroon | Limbe | 2011–2012 | GII.P3 | GII.17 | Healthy adults and Children | 4/100 strains | – | Partial ORF1/2 (653 bp) | KJ946403 | [51] |
| Kenya | Kenya | 2012–2013 | – | GII.17 | Surface water | 16/21 strains | – | 5’-end ORF2 (306 bp) | KF916584–KF916585, KF808227–KF808254 | [19] |
| South Korea | Gyeonggi | 2012 | – | GII.17 | AGE outbreak | 1 strain | Waterborne | 5’-end (205 bp) | KC413386 KC413399–KC413403 | [22] |
| China | Guangdong province | 2014–2015 | – | GII.17 | AGE outbreaks | 24/29 outbreaks | – | 5’-end (249 bp) | KP718638–KP718738 | [3] |
| United States | Gaithersburg | 2014 | GII.P17 | GII.17 | AGE in child of 3 years | 1 strain | – | Partial genome (7,527 bp) | KR083017 | [21] |
| China | Jiangsu province | 2014–2015 | GII.P17 | GII.17 | Outbreaks of AGE | 16/23 outbreaks | – | – | KR270442–KR270449 | [2] |
| Japan | Japan | 2014–2015 | GII.P17 | GII.17 | Outbreaks of AGE | 100/2,133 strains | – | Partial genome (7,534–7,555 bp) | AB983218, LC037415, LC043139, LC043167, LC043168, LC043305 | [1] |
AGE: acute gastroenteritis; HIV: human immunodeficiency virus; NCBI: National Center for Biotechnology Information; ORF: open reading frame.
a
GII.17 detection location with study location between brackets (when different from GII.17 detection location).
b
GII.17 detection year(s) with study years between brackets.
c
Either the proportion of strains that was typed as GII.17 or the proportion of outbreaks that was caused by GII.17 is given.
d
Information derived from the GenBank entry related to the accession number of the sequence.