Table 4.
Percentage of hypothetical proteins categorized and not categorized in COGs
| Not categorized in COGs | Categorized in COGs | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| # of proteins | # of hypothetical proteins | % of hypothetical proteins | Avg. protein length | Avg. protein length of hypothetical proteins | Avg. protein length of non-hypothetical proteins | # of proteins | # of hypothetical proteins | % of hypothetical proteins | Avg. protein length | Avg. protein length of hypothetical proteins | Avg. protein length of non-hypothetical proteins | ||
| Archaea | chromosome | 137,440 | 80,722 | 58.73% | 246.48 | 199.36 | 313.54 | 168,808 | 36,904 | 21.8% | 320.69 | 272.03 | 334.30 |
| plasmid | 1043 | 882 | 84.56% | 234.19 | 203.22 | 403.84 | 452 | 114 | 25.22% | 433.29 | 427.13 | 435.36 | |
| Bacteria | chromosome | 4,587,232 | 1,889,430 | 41.19% | 289.64 | 210.22 | 345.27 | 3,691,959 | 564,229 | 15.28% | 355.48 | 299.67 | 365.55 |
| plasmid | 165,579 | 89,488 | 54.04% | 256.78 | 191.62 | 333.41 | 82,042 | 13,326 | 16.24% | 359.56 | 312.21 | 368.74 | |
Note: Total number of proteins is greater than number of proteins in material (8.455.194) because some proteins belongs to more than one COG category