Table 2.
Prior and posterior distributions of parameters for refined models of (a) ‘European bottleneck’ and (b) ‘European and Polynesian bottlenecks’. Timing of events corresponds to number of generations and assumes a kākāpō generation time of 25 years [46].
(a) | Parameters | Prior | Posterior Mode | 5% HPD | 95% HPD |
Ne-modern | Uniform (1–200) | 17.6 | 7.65 | 96.5 | |
Ne-pre-European | Uniform (5 × 103–6 × 105) | 5.67 × 105 | 1.80 × 105 | 5.86 × 105 | |
Ne-pre-glaciation | Uniform (103–3 × 105) | 3.90 × 103 | 2.61 × 103 | 5.75 × 104 | |
t-bottleneck-Eu | Uniform (1–10) | 4.47 | 2.44 | 5.56 | |
t-post-glaciation | Uniform (300–600) | 600 | 354 | 600 | |
μ rate | Uniform (10−8–10−7) | 1 × 10−7 | 6.45 × 10−8 | 1 × 10−7 | |
(b) | |||||
Ne-modern | Uniform (1–200) | 16.8 | 6.38 | 88.6 | |
Ne-pre-human | Uniform (5 × 103–6 × 105) | 5.76 × 105 | 2.28 × 105 | 5.90 × 105 | |
Ne-pre-European | Uniform (5 × 103–6 × 105) | 2.66 × 105 | 4.62 × 104 | 5.17 × 105 | |
Ne-pre-glaciation | Uniform (103–3 × 105) | 5.91 × 103 | 2.87 × 103 | 6.22 × 104 | |
t-bottleneck-Pol | Uniform (20–30) | 20.1 | 20 | 30 | |
t-bottleneck-Eu | Uniform (1–10) | 4.24 | 2.32 | 5.42 | |
t-post-glaciation | Uniform (300–600) | 600 | 345 | 594 | |
μ rate | Uniform (10−8–10−7) | 1 × 10−7 | 6.25 × 10−8 | 1 × 10−7 |
Conditions: (a) Ne-pre-European > Ne-pre-glaciation; (b): Ne-pre-human > Ne-pre-glaciation; Ne-pre-human > Ne-pre-European.