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. 2018 Apr 19;9(4):220. doi: 10.3390/genes9040220

Table 2.

Prior and posterior distributions of parameters for refined models of (a) ‘European bottleneck’ and (b) ‘European and Polynesian bottlenecks’. Timing of events corresponds to number of generations and assumes a kākāpō generation time of 25 years [46].

(a) Parameters Prior Posterior Mode 5% HPD 95% HPD
Ne-modern Uniform (1–200) 17.6 7.65 96.5
Ne-pre-European Uniform (5 × 103–6 × 105) 5.67 × 105 1.80 × 105 5.86 × 105
Ne-pre-glaciation Uniform (103–3 × 105) 3.90 × 103 2.61 × 103 5.75 × 104
t-bottleneck-Eu Uniform (1–10) 4.47 2.44 5.56
t-post-glaciation Uniform (300–600) 600 354 600
μ rate Uniform (10−8–10−7) 1 × 10−7 6.45 × 10−8 1 × 10−7
(b)
Ne-modern Uniform (1–200) 16.8 6.38 88.6
Ne-pre-human Uniform (5 × 103–6 × 105) 5.76 × 105 2.28 × 105 5.90 × 105
Ne-pre-European Uniform (5 × 103–6 × 105) 2.66 × 105 4.62 × 104 5.17 × 105
Ne-pre-glaciation Uniform (103–3 × 105) 5.91 × 103 2.87 × 103 6.22 × 104
t-bottleneck-Pol Uniform (20–30) 20.1 20 30
t-bottleneck-Eu Uniform (1–10) 4.24 2.32 5.42
t-post-glaciation Uniform (300–600) 600 345 594
μ rate Uniform (10−8–10−7) 1 × 10−7 6.25 × 10−8 1 × 10−7

Conditions: (a) Ne-pre-European > Ne-pre-glaciation; (b): Ne-pre-human > Ne-pre-glaciation; Ne-pre-human > Ne-pre-European.