TABLE 4.
Percent amino acid identity of the CU-296 capsid to FCV, strain 48, and 2117-like vesivirusesa
| Region | % amino acid identitya |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| FCV CFI/68 | Strain 48 | Strain 2117 | Allston/09 | Bari/212/07 | Geel/08 | CU-47 | CU-103 | Strain 143 | LSU/96-6931 | |
| VP1 (full) | 41.5 | 71.0 | 93.5 | 86.7 | 87.0 | 88.6 | 89.0 | 84.2 | 87.7 | 94.9 |
| A, 1–119b | 22.3 | 77.7 | 96.6 | 97.3 | 95.9 | 98.6 | 98.0 | 85.8 | 97.3 | 98.0 |
| B, 120–396 | 53.8 | 80.3 | 96.6 | 90.7 | 91.4 | 91.7 | 92.8 | 92.4 | 91.0 | 97.9 |
| C, 397–411 | 19.0 | 41.7 | 75.0 | 37.5 | 37.5 | 41.7 | 50.0 | 37.5 | 45.8 | 62.5 |
| D, 412–426 | 46.7 | 73.3 | 100 | 73.3 | 73.3 | 80.0 | 86.7 | 73.3 | 86.7 | 100 |
| E, 427–521 | 8.4 | 47.4 | 85.3 | 72.6 | 76.8 | 80.0 | 76.8 | 71.6 | 76.8 | 89.5 |
| F, 522–668 | 39.6 | 66.4 | 93.3 | 88.6 | 86.6 | 87.2 | 88.6 | 85.2 | 86.6 | 95.3 |
a
The highest identities to CU-296 are indicated in boldface.
b
Vesivirus strains were aligned to FCV CFI/68 (AAC13993.1) regions with amino acid boundaries as defined by Neill (29).