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. 2017 Dec 15;34(9):1538–1546. doi: 10.1093/bioinformatics/btx806

Table 1.

Hyperparameter settings considered for DeepSynergy

Hyperparameter Values considered
Preprocessing norm; norm+tanh; norm+tanh+norm
Hidden units [8192, 8192]; [4096, 4096]; [2048, 2048];
[8192, 4096]; [4096, 2048]; [4096, 4096, 4096];
[2048, 2048, 2048]; [4096, 2048, 1024];
[8192, 4096, 2048]
Learning rates 10−2; 10−3; 10−4; 10−5
Dropout no dropout; input: 0.2, hidden: 0.5

Note: All possible combinations of the presented hyperparameters were optimized via grid-search.