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. Author manuscript; available in PMC: 2019 Apr 27.
Published in final edited form as: Circ Res. 2018 Apr 27;122(9):1276–1289. doi: 10.1161/CIRCRESAHA.117.310999

Table 3.

Major technological advances that have accelerated the adoption of Systems Biology and Systems Medicine.

Technology Methods/techniques Examples
DNA Microarrays Transcriptomics, exome capture, epigenetics, small RNA expression, genotyping, metagenomics.
Transcriptomics now replaced by “RNA-sequencing” and genotyping increasingly replaced by WGS (see below)
26
Sequencing
(Next-Generation, nanopore, or long-read sequencers; Single-molecule sequencing)
Whole genome sequencing (WGS), exome analysis, epigenetics, whole transcriptome analysis (RNA-sequencing), small RNA sequencing, GWAS, metagenomics 15, 27–31
Mass spectrometry Proteomics, metabolomics, mass spectrometry imaging, lipidomics, glycomics, protein-protein interactions, post-translational modification analysis 32–39
Microfluidics Single cell assays including gene expression, whole genome sequencing, protein analysis and epigenome analysis 13, 40–44
Flow and Mass Cytometry Single cell protein analysis 45–48
Genome editing technology Genome-wide gene deletion assays, screening assays 31,49,50
iPSC technology In vitro models for diseases, drug screening 51–56