Table 3. Different energy parameters for the modelled C-terminal domain SolyWRKY33 to measure their structural stability and DOPE score, PDF physical energy and PDF total energy.
DOPE score for five analogues available for modeled SolyWRKY33 protein and were arranged based on their DOPE score values. Loop refinement was used for increasing the structural stability and reliability of the modelled domain structure. The loop refined models were further arranged based on their minimum energy profile.
| MODEL SCORES | |||
|---|---|---|---|
| Model Name | PDF Total Energy | PDF Physical Energy | DOPE Score |
| MODEL3(M0004) | 486.3257 | 196.41296 | - 3909.786377 |
| MODEL2(M0002) | 503.0581 | 197.60207 | - 3714.846191 |
| MODEL1(M0005) | 530.0815 | 209.74898 | - 3951.424805 |
| MODEL5(M0001) | 551.2874 | 207.94684 | - 3762.376953 |
| MODEL4(M0003) | 567.6835 | 242.70571 | - 3898.345703 |
| LOOP MODEL SCORES | |||
| MODEL5(M0003L0001 | -1355.5048 | - 1233.331295 | - 4008.651855 |
| MODEL4(M0004L0001) | - 1325.4363 | -1207.3277 | - 3994.355957 |
| MODEL3(M0005L0001 | - 1283.6738 | -1218.698538 | - 3955.281738 |
| MODEL1(M0002L0001) | - 1247.1262 | - 1155.725 | - 3823.847412 |
| MODEL2(M0001L0001) | - 1171.3962 | -1108.58191 | - 3788.588135 |