Table 4. Different energy score values including DOPE score, PDF physical energy and PDF total energy for the modelled WRKY37 domain structure.
Loop refinement was used for more refinement of the modelled protein and the refined models were further arranged based on their minimum energy score values.
| MODEL SCORES | |||
|---|---|---|---|
| Model Name | PDF Total Energy | PDF Physical Energy | DOPE Score |
| MODEL3(M0003) | 296.7447 | 171.118258 | - 4106.798340 |
| MODEL2(M0002) | 297.5872 | 167.988204 | -4074.438232 |
| MODEL1(M0001) | 306.1449 | 169.599006 | -4007.020996 |
| MODEL5(M0005) | 311.8783 | 165.885920 | -4067.071289 |
| MODEL4(M0004) | 323.8305 | 169.284177 | -4016.324707 |
| LOOP MODEL SCORES | |||
| MODEL3(M0003L0001 | -1442.3384 | -1294.864 | -4161.322266 |
| MODEL4(M0004L0001) | -1348.4739 | -1221.818088 | -4051.130859 |
| MODEL5(M0005L0001 | -1292.9580 | -1202.99 | -4044.156738 |
| MODEL2(M0002L0001) | -520.6688 | -820.6483 | -3748.926758 |
| MODEL1(M0001L0001) | -383.7734 | -756.9299946 | -3697.743164 |