Skip to main content
. 2017 Oct 13;139(44):15774–15783. doi: 10.1021/jacs.7b07505

Table 1. Energetic and Geometric Properties of Groups of Constructs of Different Apparent Dimerization and Statistical Significance of the Distributionsa.

TOXCAT range (% GpA) 25–50% 50–75% 75–100% 100–125% 125+% correlation with TOXCAT
number of constructs 7 7 4 4 3  
average TOXCAT (% GpA) 37 ± 1 58 ± 2 88 ± 4 118 ± 2 141 ± 7  
CATM energy score (kcal/mol)b –14.7 ± 2.5 –27.1 ± 2.5 –30.0 ± 2.0 –39.1 ± 2.8 –41.7 ± 7.5 p < 0.000001d
van der Waals (kcal/mol) –26.2 ± 5.3 –33.7 ± 4.5 –33.6 ± 2.1 –39.3 ± 2.4 –39.0 ± 11.1 p < 0.005d
Cα-H hydrogen bonding (kcal/mol) –5.2 ± 1.1 –8.0 ± 1.9 –9.7 ± 0.5 –12.0 ± 2.3 –13.0 ± 0.8 p < 0.000001d
solvation (kcal/mol) 16.7 ± 1.9 14.2 ± 1.9 13.3 ± 2.0 11.7 ± 2.4 10.6 ± 2.7 p < 0.00005d
crossing angle (deg) –51 ± 4 –47 ± 6 –49 ± 2 –41 ± 7 –39 ± 7 p < 0.01d
number of Cα-H hydrogen bonds 4.6 ± 1.0 5.1 ± 1.1 6.0 ± 0.0 7.5 ± 1.0 8.0 ± 0.0 N/Ae
interface surface area (Å2) 4810 ± 490 4660 ± 500 4630 ± 190 4770 ± 540 4510 ± 280
interhelical distance (Å) 7.1 ± 0.2 6.7 ± 0.3 6.5 ± 0.1 6.4 ± 0.1 6.5 ± 0.0 p < 0.00005d
van der Waals/interface surface area [kcal/(mol Å2)] –0.0054 ± 0.0012 –0.0073 ± 0.0015 –0.0073 ± 0.0005 –0.0083 ± 0.0008 –0.0086 ± 0.0021 p < 0.001d
sequences with GxxxG 2/7 4/7 3/4 4/4 3/3 p < 0.01f
sequences with Sm-xxx-Smc 6/7 7/7 4/4 4/4 3/3
sequences with Gly at N1 0/7 3/7 3/4 4/4 3/3 p < 0.0001f
sequences with Gly at C1 7/7 7/7 4/4 4/4 3/3
sequences with Gly at C5 2/7 1/7 0/4 2/4 1/3
a

All values are reported as averages ± standard deviation unless noted. The outlier TNR12 was excluded from the 100–125% group.

b

Values are reported as averages ± standard error as in Figure 4.

c

Sm-xxx-Sm are defined by any combinations of Gly, Ala, Ser, and Cys at the first and last position.

d

Rank order (Spearman) correlation analysis.60

e

Rank correlation statistics not applicable to noncontinuous variable.

f

Point Biserial Correlation analysis.62