Table 1. Energetic and Geometric Properties of Groups of Constructs of Different Apparent Dimerization and Statistical Significance of the Distributionsa.
TOXCAT range (% GpA) | 25–50% | 50–75% | 75–100% | 100–125% | 125+% | correlation with TOXCAT |
---|---|---|---|---|---|---|
number of constructs | 7 | 7 | 4 | 4 | 3 | |
average TOXCAT (% GpA) | 37 ± 1 | 58 ± 2 | 88 ± 4 | 118 ± 2 | 141 ± 7 | |
CATM energy score (kcal/mol)b | –14.7 ± 2.5 | –27.1 ± 2.5 | –30.0 ± 2.0 | –39.1 ± 2.8 | –41.7 ± 7.5 | p < 0.000001d |
van der Waals (kcal/mol) | –26.2 ± 5.3 | –33.7 ± 4.5 | –33.6 ± 2.1 | –39.3 ± 2.4 | –39.0 ± 11.1 | p < 0.005d |
Cα-H hydrogen bonding (kcal/mol) | –5.2 ± 1.1 | –8.0 ± 1.9 | –9.7 ± 0.5 | –12.0 ± 2.3 | –13.0 ± 0.8 | p < 0.000001d |
solvation (kcal/mol) | 16.7 ± 1.9 | 14.2 ± 1.9 | 13.3 ± 2.0 | 11.7 ± 2.4 | 10.6 ± 2.7 | p < 0.00005d |
crossing angle (deg) | –51 ± 4 | –47 ± 6 | –49 ± 2 | –41 ± 7 | –39 ± 7 | p < 0.01d |
number of Cα-H hydrogen bonds | 4.6 ± 1.0 | 5.1 ± 1.1 | 6.0 ± 0.0 | 7.5 ± 1.0 | 8.0 ± 0.0 | N/Ae |
interface surface area (Å2) | 4810 ± 490 | 4660 ± 500 | 4630 ± 190 | 4770 ± 540 | 4510 ± 280 | – |
interhelical distance (Å) | 7.1 ± 0.2 | 6.7 ± 0.3 | 6.5 ± 0.1 | 6.4 ± 0.1 | 6.5 ± 0.0 | p < 0.00005d |
van der Waals/interface surface area [kcal/(mol Å2)] | –0.0054 ± 0.0012 | –0.0073 ± 0.0015 | –0.0073 ± 0.0005 | –0.0083 ± 0.0008 | –0.0086 ± 0.0021 | p < 0.001d |
sequences with GxxxG | 2/7 | 4/7 | 3/4 | 4/4 | 3/3 | p < 0.01f |
sequences with Sm-xxx-Smc | 6/7 | 7/7 | 4/4 | 4/4 | 3/3 | – |
sequences with Gly at N1 | 0/7 | 3/7 | 3/4 | 4/4 | 3/3 | p < 0.0001f |
sequences with Gly at C1 | 7/7 | 7/7 | 4/4 | 4/4 | 3/3 | – |
sequences with Gly at C5 | 2/7 | 1/7 | 0/4 | 2/4 | 1/3 | – |
All values are reported as averages ± standard deviation unless noted. The outlier TNR12 was excluded from the 100–125% group.
Sm-xxx-Sm are defined by any combinations of Gly, Ala, Ser, and Cys at the first and last position.
Rank order (Spearman) correlation analysis.60
Rank correlation statistics not applicable to noncontinuous variable.
Point Biserial Correlation analysis.62