Table 2.
Genome-wide significant associations for RGP under low temperature using CMLM
| SNPa | Chromosome | Positionb | P value | − Log10(P) | MAF | R 2 |
|---|---|---|---|---|---|---|
| chr10_12401691 | 10 | 12,401,691 | 1.35E−06 | 5.87 | 0.2197 | 0.1499 |
| chr10_12401749 | 10 | 12,401,749 | 2.69E−06 | 5.57 | 0.2159 | 0.1407 |
| chr10_12493993 | 10 | 12,493,993 | 2.69E−06 | 5.57 | 0.2159 | 0.1407 |
| chr10_12493994 | 10 | 12,493,994 | 2.69E−06 | 5.57 | 0.2159 | 0.1407 |
| chr10_12400200 | 10 | 12,400,200 | 3.14E−06 | 5.50 | 0.2197 | 0.1386 |
| chr10_12489259 | 10 | 12,489,259 | 5.92E−06 | 5.23 | 0.1780 | 0.1302 |
| chr10_11890928 | 10 | 11,890,928 | 6.89E−06 | 5.16 | 0.1288 | 0.1282 |
MAF minor allele frequency
aThe SNP positions were based on the annotation data on Os-Nipponbare-Reference-IRGSP-1.0 (RAP-DB, http://rapdb.dna.affrc.go.jp/)
bPosition of the SNP showing the most significant association for RGP