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. 2018 Apr 11;44(2):195–209. doi: 10.1007/s10867-018-9490-y

Fig. 5.

Fig. 5

Alternative PMF reconstructions. a WHAM was performed using 20-ns blocks and averaged over the blocks. For the PC and mixed system, there were three blocks (20–40 ns, 40–60 ns, and 60–80 ns) and for the PG system there were two blocks (20–40 ns and 40–60 ns). The shaded regions are the standard error ( ) of the block-averaged PMFs. b dTRAM analysis was performed using all data after excluding the first 20 ns for equilibration