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. 2018 Apr 24;9:776. doi: 10.3389/fmicb.2018.00776

Table 1.

Overall information about the distribution of TF involved in arabinose/AOS utilization in 45 studied genomes of the Bifidobacteriaceae family and composition of their regulons.

TF regulon Example locus taga TF family Sugar utilized No.b TF regulon contentc
AraU BL1693 ROK Arabinose 18 araU (13), araFGH (16)
AbfR BL0543 LacI α-AOS 12 abfR (12), abfB2 (12), araNtPtQt (6), afuB-H1 (3), abfII_2 (1)
AauR BL0185 LacI α-AOS 21 aauR (17), abfII_1 (16), abfII_2 (19), aauABC (19), abnA1 (14), abnA2 (10), afuB-H1 (2), abfBad (2), abfC (1), BDP_0243 (2), BBOMB_ 0938 (1), abfB2 (1), araNtPtQt (1)
AauU1 BISA_0485 LacI α-AOS 3 aauU1 (3), abfII_2 (3), abfT1 (3)
AauU2 BREU_1998 LacI α-AOS 3 aauU2 (3), abfB (3), abfT2 (3)
XsaR BAD_1207 TetR α-AOS 5 xsaR (5), xsA (5), xsaT (5)
BauR1 BL0426 LacI β-AOS 9 bauR (9), hypBA1 (9), hypBA2 (5), bauABC (9)
BauR2 BREU_0448 LacI β-AOS 5 bauR2 (4), hypBA1 (4), bauT (3)

aLocus tags for each TF gene and genome are given in Supplementary Table S2. bNumber of genomes possessing a TF. cNumber of genomes in which a gene is regulated by a TF is given in parenthesis. Distribution of TF regulated genes and TF binding sites is given in Supplementary Table S2.