Table 5.
QTL aligned and candidate genes identified for seedling and adult plant stages.
| QTL | Chr. | Pos (cM) | Gene Identifier | Description | Known co-segregating loci** |
|---|---|---|---|---|---|
| (a) SEEDLING STAGE | |||||
| Race Q | |||||
| SRT_R0_1 | 2H | 52.90 | MLOC_8615.2 | Glucan endo-1,3-beta-glucosidase 4 | 11_10796 [(Toojinda et al., 2000) (APS); (Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS)] |
| SRT_R0_4 | 4H | 61.12 | AK356118 | Glucan endo-1,3-beta-glucosidase 4 | – |
| SRT_R0_5 | 5H | 151.98 | MLOC_6270.1 | NBS-LRR disease resistance protein family-1 | SCRI_RS_2824 [(Verhoeven et al., 2011) (APS); (Gutiérrez et al., 2015) (APS); (Belcher et al., 2018) (APS)] |
| SRT_R0_7 | 6H | 113.24 | MLOC_67477.1 | Disease resistance protein (CC-NBS-LRR class) family | – |
| SRT_R0_8 | 6H | 118.77 | AK370472 | Disease resistance protein | |
| RACE 24 | |||||
| SRT_R24_1 | 1H | 28.88 | MLOC_74415.1 | Lr21 | – |
| SRT_R24_2 | 3H | 7.01 | MLOC_62179.1 | NBS-LRR disease resistance protein, putative | – |
| SRT_R24_3 | 3H | 14.94 | MLOC_75090.1 | Endo-1,4-beta-xylanase check | – |
| SRT_R24_4 | 3H | 36.98 | MLOC_56904.1 | NBS-LRR disease resistance protein homolog | – |
| SRT_R24_5 | 3H | 42.46 | – | – | SCRI_RS_154973 [(Rao et al., 2007) (APS); (Belcher et al., 2018) (APS)] |
| SRT_R24_6 | 4H | 50.99 | – | – | 11_20853 [(Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS); (Esvelt Klos et al., 2016) (SDL)] |
| SRT_R24_7 | 4H | 111.33 | AK365216 | Disease resistance-responsive (dirigent-like protein) family protein | 12_31138 [(Verhoeven et al., 2011) (APS); (Gutiérrez et al., 2015) (APS); (Belcher et al., 2018) (APS)] |
| SRT_R24_8 | 5H | 3.02 | MLOC_67608.3 | NBS-LRR disease resistance protein, putative | - |
| SRT_R24_9 | 5H | 151.88 | MLOC_6270.1 | NBS-LRR disease resistance protein family-1 | SCRI_RS_2824 [(Verhoeven et al., 2011) (APS); (Gutiérrez et al., 2015) (APS); (Belcher et al., 2018) (APS)] |
| SRT_R24_10 | 7H | 24.06 | MLOC_67182.3 | Cc-nbs-lrr resistance protein | – |
| RACE 57 | |||||
| SRT_R57_2 | 2H | 94.55 | – | – | 3259480|F|0 [(Dracatos et al., 2016) (SDL) |
| SRT_R57_3 | 3H | 45.22 | – | – | SCRI_RS_154973 [(Rao et al., 2007) (APS)] |
| SRT_R57_4 | 3H | 59.63 | MLOC_51359.1 | NBS-LRR-like protein | – |
| SRT_R57_6 | 7H | 15.37 | MLOC_5217.3 | Disease resistance protein (CC-NBS-LRR) | – |
| SRT_R57_7 | 7H | 23.02 | MLOC_67182.3 | Cc-nbs-lrr resistance protein | – |
| RACE G – | |||||
| SRT_RG_1 | 2H | 8.85 | MLOC_73747.1 | Cc-nbs-lrr resistance protein | – |
| SRT_RG_3 | 2H | 146.72 | MLOC_58526.2 | Disease resistance protein (CC-NBS-LRR) | – |
| SRT_RG_4 | 4H | 68.98 | MLOC_74055.1 | NAC domain protein | – |
| SRT_RG_5 | 4H | 110.20 | AK365216 | Disease resistance-responsive (dirigent-like protein) family protein | 12_31138 [(Verhoeven et al., 2011) (APS) (Gutiérrez et al., 2015) (APS); (Belcher et al., 2018) (APS)] |
| SRT_RG_7 | 5H | 129.65 | AK356729 | Glucan endo-1,3-beta-glucosidase 3 | 11_11532 [(Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS)] |
| SRT_RG_8 | 6H | 53.75 | MLOC_13229.1 | Disease Resistance Protein | – |
| SRT_RG_10 | 7H | 97.10 | MLOC_16158.3 | NB-ARC domain-containing disease resistance protein | – |
| RACE M – | |||||
| SRT_RM_1 | 1H | 64.02 | MLOC_59979.1 | NBS-LRR disease resistance protein homolog | – |
| SRT_RM_2 | 3H | 98.23 | – | – | 11_21212 [(Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS)] |
| SRT_RM_3 | 4H | 51.42 | – | – | 11_20853 [(Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS); (Esvelt Klos et al., 2016) (SDL)] |
| SRT_RM_5 | 5H | 120.35 | MLOC_30580.2 | NBS-LRR disease resistance protein | – |
| SRT_RM_6 | 5H | 133.69 | MLOC_10360.2 | NBS-LRR disease resistance protein, putative | 11_11532 [(Vales et al., 2005) (APS); (Gutiérrez et al., 2015) (APS)] |
| SRT_RM_10 | 7H | 132.65 | MLOC_38424.1 | NBS-LRR disease resistance protein | 11_10843 [(Thomas et al., 1995) (APS); (Gutiérrez et al., 2015) (APS); (Dracatos et al., 2016) (SDL)] |
| (a) ADULT PLANT STAGE | |||||
| DURGAPURA 2013 | |||||
| APS_Dg13_1* | 1H | 40.5 | MLOC_11791.2 | Disease Resistance Protein | 12_30817 [(Verhoeven et al., 2011) (APS); (Belcher et al., 2018) (APS)] |
| APS_Dg13_3 | 5H | 137.08 | MLOC_63574.2 | Glucan endo-1,3-beta-glucosidase 5 | – |
| DURGAPURA 2014 | |||||
| APS_Dg14_1* | 1H | 47.52 | MLOC_4500.2 | NBS-LRR disease resistance protein homolog | – |
| APS_Dg14_2 | 2H | 8.85 | MLOC_78849.2 | Disease resistance protein (TIR-NBS-LRR class) | – |
| APS_Dg14_5 | 5H | 137.08 | MLOC_63574.2 | Glucan endo-1,3-beta-glucosidase 5 | – |
| APS_Dg14_6 | 6H | 119.12 | MLOC_43055.1 | Disease Resistance Protein | – |
| KARNAL 2014 | |||||
| APS_Kr14_1* | 1H | 103.82 | MLOC_54911.1 | 3263737|F|0 [(Dracatos et al., 2016) (SDL)] | |
| APS_Kr14_4* | 2H | 64.83 | MLOC_34376.1 | Endo-1,4-b-D-glucanase | 3258146|F|0 [(Dracatos et al., 2016) (SDL)] |
| APS_Kr14_6 | 2H | 149.26 | MLOC_19010.2 | TIR-NBS-LRR class disease resistance protein | – |
| APS_Kr14_7* | 5H | 137.08 | MLOC_63574.2 | Glucan endo-1,3-beta-glucosidase 5 | – |
| APS_Kr14_8* | 5H | 159.51 | MLOC_58845.1 | NBS-LRR disease resistance protein family-1 | – |
*
Putative Adult Plant Resistance QTL;
**
SRT: Seedling Resistance Test; APS: Adult Plant Stage.