Skip to main content
. 2018 Jan 8;98(2):616–624. doi: 10.4269/ajtmh.17-0070

Table 5.

Identity matrix of Orientia tsutsugamushi strains in chigger, small mammals, and humans in the southwest area of Korea

Percent identity
Divergence 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37
1 – 92.1 92.2 76.7 67.1 67.0 67.0 67.0 85.6 87.4 88.3 93.7 73.8 70.9 72.4 70.0 82.7 66.1 71.8 81.2 95.5 87.4 65.7 67.9 68.8 68.4 87.7 87.2 87.2 90.3 89.9 90.1 89.4 72.4 84.1 83.2 82.7 1 KY946003_Human_Boryong
2 0.0 – 99.8 76.7 73.8 74.5 73.8 74.9 83.4 85.2 85.6 86.6 66.4 64.1 65.2 62.8 80.5 58.8 75.8 85.4 88.4 80.0 64.1 67.3 66.8 66.4 80.3 80.0 91.0 94.4 94.4 94.0 93.9 76.9 88.4 87.5 87.0 2 KY946031_Human_Boryong
3 0.0 0.0 – 76.5 74.0 74.7 74.0 74.7 83.2 85.0 85.7 86.8 66.6 64.3 65.3 63.0 80.3 59.0 76.0 85.6 88.6 80.1 63.9 67.5 66.6 66.2 80.5 80.1 91.2 94.6 94.6 94.2 94.0 76.9 88.6 87.7 87.2 3 KY946061_Human_Boryong
4 8.4 8.9 8.9 – 59.6 59.4 58.7 59.7 82.3 80.9 81.6 71.1 57.2 57.0 57.9 55.1 84.1 51.8 60.5 76.4 72.9 77.4 71.5 55.4 61.7 61.4 75.5 78.9 67.9 71.1 71.1 70.8 70.6 57.9 65.3 64.4 63.9 4 KY946128_Human_Pajoo
5 34.7 34.7 34.6 37.5 – 99.3 98.4 98.9 64.6 66.2 67.7 61.7 81.6 82.9 91.2 68.4 62.6 77.6 70.6 67.9 63.5 62.8 64.3 93.3 92.1 91.7 61.9 62.3 68.2 69.3 69.3 69.5 69.1 58.5 63.7 63.5 63.0 5 KY946124_Human_Kawasaki
6 34.2 34.3 34.2 37.0 0.2 – 99.1 99.6 64.4 66.1 67.5 61.6 81.4 82.3 90.6 67.7 62.5 77.1 71.3 68.6 63.4 62.6 64.1 92.8 91.9 91.5 61.7 62.1 69.0 70.0 70.0 70.2 69.9 59.2 64.4 64.3 63.7 6 KY946125_Human_Kawasaki
7 33.9 34.3 34.1 36.9 0.2 0.0 – 98.9 63.7 65.3 67.5 61.6 81.4 82.3 90.4 67.5 61.7 77.1 71.3 69.1 63.4 62.6 63.4 92.6 91.0 90.6 61.7 62.1 69.9 70.8 70.4 71.1 70.4 59.9 65.2 64.8 64.3 7 KY946126_human_kawasaki
8 33.9 33.9 33.9 36.5 0.5 0.2 0.0 – 64.8 66.4 67.5 61.6 81.4 82.3 90.3 67.3 62.8 77.1 71.3 68.4 63.4 62.6 64.4 92.4 91.9 91.5 61.7 62.1 68.8 69.9 69.9 70.0 69.7 59.2 64.3 64.1 63.5 8 KY946127_human_kawasaki
9 8.6 9.2 9.2 5.5 36.5 36.1 36.0 35.7 – 98.2 84.8 82.9 68.8 64.1 67.3 64.4 96.0 62.1 64.4 79.4 84.7 86.8 68.8 60.5 71.7 71.5 91.7 87.2 74.5 77.8 77.8 77.4 77.3 64.1 71.8 70.9 70.4 9 KY946107_Human_Karp
10 8.4 9.0 9.0 5.5 35.9 35.4 35.4 35.1 0.0 – 86.5 84.5 70.6 65.7 69.0 66.1 94.4 63.5 66.1 81.0 86.3 88.3 67.3 62.1 71.8 71.5 93.3 88.6 76.4 79.6 79.6 79.2 79.1 65.5 73.6 72.7 72.2 10 KY946108_Human_Karp
11 9.5 9.5 9.4 0.3 34.8 34.3 34.1 34.1 6.1 6.2 – 84.8 71.3 69.7 68.6 67.3 82.5 64.4 72.0 89.9 86.8 91.9 61.4 70.4 64.8 64.4 88.4 91.7 82.3 83.8 83.6 84.7 83.0 69.9 79.1 77.8 77.6 11 AF430142_Human_Pajoo
12 1.0 0.0 0.0 8.7 34.7 34.2 33.9 33.9 10.1 9.7 9.2 – 75.3 71.1 69.5 73.6 80.9 70.9 66.6 75.5 96.6 87.5 61.9 67.5 66.6 66.6 86.8 85.6 83.2 84.7 84.7 85.6 84.3 68.1 83.4 81.9 81.8 12 M63380_Human_Kuroki
13 25.7 28.0 27.9 31.5 11.1 10.6 10.4 10.4 27.5 26.8 26.7 24.5 – 91.2 89.7 78.2 66.4 89.2 65.0 62.6 75.1 73.8 63.9 86.3 85.9 85.6 73.3 71.1 65.3 65.3 65.0 66.4 65.0 54.9 61.6 61.0 61.4 13 DQ485289_Gilliam
14 31.3 33.9 33.8 33.2 10.0 10.1 9.8 9.8 32.1 31.6 30.6 30.9 7.7 – 88.1 77.4 61.7 94.8 65.5 61.2 69.3 69.1 61.2 89.2 83.8 83.4 67.5 66.2 63.0 63.0 62.6 64.1 62.6 53.1 60.5 59.7 59.9 14 AF173033_lkeda
15 31.9 34.7 34.6 34.6 0.2 0.2 0.2 0.5 34.2 33.7 32.5 31.9 10.6 9.3 – 76.5 65.9 85.9 65.7 62.5 71.3 71.1 66.1 92.4 95.5 95.1 70.2 70.2 63.5 63.9 63.5 64.6 63.4 53.2 58.5 58.3 57.8 15 M63383_Human_Kawasaki
16 30.2 32.6 32.5 33.5 25.9 26.5 26.6 27.0 34.1 33.6 31.6 29.4 23.5 23.9 23.7 – 63.0 76.2 66.6 59.4 71.3 70.8 62.5 74.5 72.4 72.0 68.2 67.3 61.6 61.7 61.4 62.5 61.0 52.7 59.4 58.1 58.3 16 AY836148_Kato
17 8.9 9.5 9.5 5.5 36.0 35.5 35.4 35.1 1.3 1.1 5.5 9.1 27.4 32.2 32.5 32.4 – 61.7 62.3 77.1 83.8 86.1 70.8 58.5 70.4 70.8 90.8 86.8 71.7 74.9 74.9 74.5 74.4 61.2 69.0 68.1 67.5 17 AY956315_Human_Karp
18 31.2 33.9 33.8 33.2 10.0 10.1 9.8 9.8 33.1 32.3 30.6 29.8 7.5 0.0 9.4 23.3 31.1 – 60.3 56.0 69.9 69.1 58.1 83.9 82.3 82.7 68.1 66.8 57.8 57.8 57.4 58.8 57.4 47.8 57.9 57.4 57.4 18 U19903_Human_Yonchon
19 31.2 31.5 31.4 33.8 35.6 35.1 34.9 34.9 35.8 35.2 32.0 30.8 32.0 32.1 34.8 28.2 35.6 32.1 – 71.8 68.4 67.1 59.6 67.9 63.2 62.8 65.5 66.4 71.7 73.3 72.9 73.3 72.9 62.5 67.3 66.6 66.1 19 U19904_Rattus._rattus_TA6.7.8
20 14.7 12.2 12.1 2.8 37.4 37.0 37.5 37.1 9.1 9.2 5.1 15.2 35.6 40.0 40.5 39.8 8.6 40.0 37.0 – 77.3 83.2 56.9 64.6 60.5 60.1 80.0 84.3 84.7 87.9 86.8 86.8 87.2 74.0 81.4 81.0 80.7 20 KX363954_Apod.e.mus_agrarius
21 1.0 0.0 0.0 8.7 34.7 34.2 33.9 33.9 10.1 9.7 9.0 0.2 24.6 30.6 31.9 29.4 9.1 29.3 30.8 15.2 – 90.6 63.7 66.1 68.4 68.8 90.3 88.8 85.0 86.5 86.3 87.5 86.1 69.9 81.8 80.5 80.3 21 JQ898368_Human_Boryong
22 10.2 10.5 10.5 3.4 34.8 34.3 34.1 34.1 8.6 8.4 3.4 10.1 25.5 29.7 31.0 29.2 7.3 28.8 32.0 8.0 9.8 – 62.8 65.5 68.1 68.4 92.8 94.6 76.9 78.7 78.3 79.6 78.0 64.8 73.5 72.4 72.6 22 AF430141_Human_Young-worl
23 27.0 28.3 28.3 29.7 30.3 29.8 29.7 29.3 28.2 28.2 28.6 27.0 28.6 31.5 28.2 25.1 27.8 30.9 31.4 33.3 27.0 27.4 – 59.9 69.9 69.5 62.1 62.1 57.8 59.4 59.0 59.0 58.8 51.3 53.1 52.3 52.2 23 M63381_Shimokoshi
24 33.3 34.7 34.6 36.2 0.2 0.2 0.2 0.5 35.5 34.9 32.6 32.6 10.7 9.4 0.0 24.1 34.9 9.4 34.8 40.5 32.9 32.6 29.7 – 87.9 87.5 63.5 62.8 67.0 66.2 66.1 67.7 65.9 56.5 64.1 63.5 63.4 24 AF173039_Kanda
25 32.5 35.0 35.0 34.1 0.5 0.0 0.0 0.2 34.0 33.9 33.5 32.3 10.4 9.8 0.2 25.3 31.9 9.8 35.9 37.8 32.3 31.7 27.8 0.2 – 99.6 67.1 67.5 60.8 61.9 61.9 62.1 61.7 51.4 56.3 56.1 55.6 25 AF173038_Taguchi
26 32.5 35.0 35.0 34.1 0.5 0.0 0.0 0.2 34.2 33.9 33.5 32.2 10.4 9.8 0.2 25.3 31.7 9.8 35.9 37.8 32.1 31.5 27.8 0.2 0.0 – 67.5 67.9 60.5 61.6 61.6 61.7 61.4 51.1 56.0 55.8 55.2 26 AF.173037_Oishi
27 9.3 9.5 9.4 5.8 35.9 35.5 35.2 35.2 1.9 1.7 5.9 9.2 24.2 30.2 32.0 31.4 0.9 29.5 34.5 12.1 8.9 6.7 28.2 34.0 32.7 32.6 – 93.5 76.4 78.5 78.3 79.2 77.8 64.4 73.1 72.0 71.7 27 AF430143_Human_Jecheon
28 9.5 10.0 10.0 0.8 35.2 34.8 34.5 34.5 7.6 7.5 0.6 9.5 26.3 30.8 31.5 31.2 5.9 30.1 32.7 5.6 9.4 3.3 28.2 33.6 32.1 31.9 6.2 – 75.3 77.8 77.4 78.2 76.9 63.4 72.2 71.5 70.9 28 GQ332749_CH0711a_TAIWAN
29 5.6 4.1 4.1 14.5 35.9 35.5 35.2 35.6 14.0 13.7 15.9 6.0 31.9 38.0 36.6 37.0 14.5 38.0 36.2 17.1 6.0 16.8 32.7 37.2 36.3 36.3 15.5 15.6 – 92.4 93.0 93.9 92.6 79.8 90.4 88.8 89.0 29 KY266825_L.scutellare
30 4.1 2.1 2.1 12.0 27.2 36.8 36.9 36.9 11.8 11.5 14.4 4.8 32.8 38.9 39.5 37.5 12.2 38.9 36.0 13.3 4.8 14.7 30.6 39.7 37.6 37.6 14.4 14.5 7.3 – 96.0 95.8 96.4 79.2 90.1 88.6 88.6 30 KY266826_L.scutellare
31 39 1.9 1.9 11.6 36.9 36.5 36.7 36.6 11.5 11.3 14.5 4.6 33.2 39.4 39.3 38.0 11.9 39.4 35.9 14.7 4.8 15.0 31.1 39.8 37.3 37.3 14.5 14.3 6.8 4.4 – 96.2 97.7 79.4 91.0 90.3 89.4 31 KY266827_L.scutellare
32 3.0 1.6 1.6 11.4 35.5 35.1 34.9 35.2 11.3 11.1 12.6 3.2 30.1 36.0 36.0 35.5 11.7 36.0 34.3 14.0 3.0 12.9 30.0 36.1 35.9 35.9 12.4 12.5 5.4 3.9 3.7 – 96.0 79.1 91.5 91.0 90.8 32 KY266828_L.scutellare
33 4.8 1.9 1.9 11.7 36.3 35.9 36.4 36.0 11.6 11.3 15.0 4.8 32.9 39.1 40.0 38.4 12.0 39.1 36.1 14.9 4.8 15.3 30.5 39.9 36.7 36.7 15.0 15.4 7.1 3.7 1.8 3.2 – 79.4 90.1 89.4 89.4 33 KY266829_L.scutellare
34 25.9 22.8 23.1 33.8 57.0 56.4 56.6 56.1 30.4 29.7 35.4 26.9 53.4 60.0 59.6 55.1 31.6 60.0 54.7 32.3 26.9 35.8 49.6 60.6 56.8 56.8 33.9 34.2 24.6 24.7 24.6 25.0 24.4 – 75.5 73.6 74.0 34 KY266830_L.scutellare
35 3.9 2.1 2.1 11.8 36.8 36.4 36.6 36.5 11.9 11.7 14.2 6.5 34.5 41.9 38.1 40.8 12.3 43.9 35.9 14.3 4.6 15.3 31.9 40.6 37.2 37.2 13.8 13.6 3.9 4.6 3.7 3.2 4.2 24.0 – 92.1 92.4 35 KY266824_L.scutellare
36 6.0 4.3 4.2 14.6 38.4 37.9 38.5 38.1 14.3 14.0 16.6 8.9 36.0 44.1 39.6 44.0 14.8 45.7 38.4 15.3 6.7 17.4 35.0 42.3 38.8 38.8 16.4 15.7 6.1 7.5 5.1 3.9 5.6 26.4 8.5 – 96.0 36 KX363952_L.scutellare
37 6.3 4.5 4.5 15.0 38.9 38.4 39.0 38.6 14.7 14.3 16.9 9.1 35.3 43.6 40.0 43.5 15.2 45.7 38.9 15.9 6.9 17.1 34.7 42.7 39.3 39.3 16.4 16.0 6.3 7.0 6.3 4.6 5.6 26.4 8.4 4.3 – 37 KX363953_L.scutellare
– 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 – –