Table 2. Enrichment of 10 databases included in FusionHub with respect to five test datasets obtained from literature.
Edgren_testset | Berger_testset | Yu_testset | Kumar_sinha_testset | Klijn_testset | Total | Percentage match | |
---|---|---|---|---|---|---|---|
Total genes in the test set | 27 | 11 | 9 | 113 | 2199 | 2359 | - |
Total genes for which annotation found in at least one database | 19 | 3 | 3 | 85 | 281 | 391 | 16.57 |
Database | Database wise exact match count | Total match count | Total match Percentage | ||||
COSMIC | 0 | 0 | 2 | 45 | 20 | 67 | 2.84 |
CHIMERKB | 0 | 0 | 2 | 68 | 32 | 102 | 4.32 |
CHIMERPUB | 3 | 0 | 3 | 41 | 26 | 73 | 3.09 |
CHIMERSEQ | 18 | 2 | 2 | 51 | 184 | 257 | 10.89 |
CHITARS | 18 | 0 | 1 | 40 | 34 | 93 | 3.94 |
FARE.CAFE | 0 | 0 | 2 | 53 | 19 | 74 | 3.14 |
TICDB | 0 | 0 | 2 | 52 | 17 | 71 | 3.01 |
Tumor fusion portal | 1 | 2 | 1 | 28 | 194 | 226 | 9.58 |
FusionCancer | 0 | 0 | 2 | 7 | 15 | 24 | 1.02 |
ConjoinG | 0 | 0 | 0 | 1 | 2 | 3 | 0.13 |