TABLE 4.

Genome sequences used as references to assess phylogroup membership

Accession no.	Strain	Phylogroup
CP000802	E. coli HS	A
CP000946	E. coli C ATCC 8739	A
CP002729	E. coli UMNK88	A
CP006636	E. coli PCN061	A
CP007265	E. coli ST540	A
CP007390	E. coli ST540-A	A
CP007391	E. coli ST540-AN	A
CP007594	E. coli SEC470	A
CP009166	E. coli 1303	A
CP010129	E. coli C9	A
CP010137	E. coli D2	A
CP010143	E. coli D4	A
CP010152	E. coli D9	A
CP010160	E. coli H1	A
CP010163	E. coli H2	A
CP014583	E. coli CFSAN004176	B1
CP014670	E. coli CFSAN004177	B1
CP014752	E. coli PSUO103	B1
CP015228	E. coli 09-00049	B1
CP015240	E. coli 2011C-3911	B1
CP015244	E. coli RM7190	B1
CP015912	E. coli 210205630	B1
CP015995	E. coli S51	B1
CP016034	E. coli Co6114	B1
CP016546	E. coli O177:H21	B1
CP016628	E. coli FORC_041	B1
CP016828	E. coli FORC_043	B1
CP018323	E. coli 9	B1
CP018840	E. coli 64	B1
CP018948	E. coli Ecol_224	B1
CP018965	E. coli Ecol_517	B1
CP019558	E. coli 207	B1
CP019560	E. coli 1031	B1
CP000468	E. coli APEC O1	B2
CP001855	E. coli NRG 857C	B2
CP001969	E. coli IHE3034	B2
CP002167	E. coli UM146	B2
CP002211	E. coli clone D i2	B2
CP002212	E. coli clone D i14	B2
CP002797	E. coli NA114	B2
CP005930	E. coli APEC IMT5155	B2
CP006784	E. coli JJ1886	B2
CP006830	E. coli APEC O18	B2
CP007149	E. coli RS218	B2
CP007275	E. coli NMEC O18	B2
CP007799	E. coli Nissle 1917	B2
CP006632	E. coli PCN033	D
CP007392	E. coli ST2747	D
CP007393	E. coli ST2747-A	D
CP007394	E. coli ST2747-AN	D
CP010116	E. coli C1	D
CP010121	E. coli C4	D
CP018206	E. coli MRSN346647	D
CP018770	E. coli 2016C-3936C1	D
CP018957	E. coli Ecol_316	D
CP018976	E. coli Ecol_545	D
CP021202	E. coli Z1002	D
CP022229	E. coli WCHEC96200	D
CP023142	E. coli CFSAN061770	D
CP023353	E. coli 746	D
CP023364	E. coli 144	D
CP023386	E. coli 1190	D
CP023644	E. coli M12	D
CP023960	E. coli FDAARGOS_448	D
CP006027	E. coli RM13514	E
CP006262	E. coli RM13516	E
CP006736	Shigella dysenteriae 1617	E
CP007133	E. coli RM12761	E
CP007136	E. coli RM12581	E
CP007592	E. coli Santai	E
CP008805	E. coli SS17	E
CP008957	E. coli EDL933	E
CP010304	E. coli SS52	E
CP012802	E. coli WS4202	E
CP014314	E. coli JEONG-1266	E
CP015020	E. coli 28RC1	E
CP015023	E. coli SRCC 1675	E
CP015241	E. coli 2013C-4465	E
CP015831	E. coli 644-PT8	E
CP015832	E. coli 180-PT54	E
CP015842	E. coli FRIK2533	E
CP015843	E. coli FRIK2455	E
CP015846	E. coli FRIK2069	E
CP016625	E. coli FRIK944	E
CP016755	E. coli FORC_044	E
AP017617	E. coli MRY15-117	F1
AP017620	E. coli MRY15-131	F1
CP000970	E. coli SMS-3-5	F1
CP003034	E. coli CE10	F1
CP008697	E. coli ST648	F1
CP009859	E. coli ECONIH1	F1
CP015834	E. coli MS6198	F1
CP019029	E. coli Ecol_881	F1
CP022164	E. coli M160133	F1
CP023366	E. coli 1428	F1
CP023815	E. coli IMT16316	F1
CU928164	E. coli IAI39	F1
AP017610	E. coli 20Ec-P-124	F2
CP006834	E. coli APEC O2	F2
CP010157	E. coli D10	F2
CP012112	E. coli PSUO78	F2
CP013025	E. coli 2009C-3133	F2
CP019903	E. coli MDR_56	F2
CP015229	E. coli 06-00048	G
AEJX00000000	Escherichia sp. TW15838	Cryptic lineage I
AEJW00000000	Escherichia sp. TW09231	Cryptic lineage III
AEJV00000000	Escherichia sp. TW09276	Cryptic lineage III
AEJZ00000000	Escherichia sp. TW14182	Cryptic lineage IV
AEME00000000	Escherichia sp. TW09308	Cryptic lineage V
AEJU00000000	Escherichia albertii TW08933	E. albertii
AEJY00000000	Escherichia albertii TW15818	E. albertii