Table 4.

WGS Pipeline variant calling test for TCRBOA6 at two heterogeneous sites.

Caller	Filter	Both Sites Matched	%	Site 1 Only	%	Site 2 Only	%
MuTect2	all	184346	91.0	9204	4.5	8973	4.4
	PASS	3700	98.8	23	0.6	23	0.6
Strelka	all	26731	99.4	87	0.3	85	0.3
	PASS	1409	98.5	12	0.8	10	0.7
Lumpy	*	7228	99.7	12	0.2	9	0.1

Site 1 was a Dell R820 server on-site, Site 2 was a Google Compute Engine virtual machine. *Lumpy outputs do not include filter information.