. 2018 May 2;13(5):e0196096. doi: 10.1371/journal.pone.0196096

Table 2. Number of alleles, allele size range, allele frequency, unique allele, gene diversity and polymorphism information content (PIC) of 50 SSR markers across 50 red rice germplasms.

Marker	Chromosome		Motif	Allele(s)			Size Range (bp)	Size (bp)^b	Allele Frequency (%)^c	Gene Diversity^d	PIC^e
Marker	#	Position (cM)	Motif	No.^a	Unique	Rare	Size Range (bp)	Size (bp)^b	Allele Frequency (%)^c	Gene Diversity^d	PIC^e
RM1	1	29.7	(GA)26	4	1	0	87–112	112	57.14	0.55	0.47
RM5	1	94.9	GA)14	2	0	1	110–115	115	86.00	0.24	0.21
RM35	1	49.9	(GA)19	3	0	1	200–212	212	90.00	0.18	0.18
RM312	1	71.6	(ATTT)4(GT)9	2	0	0	98–104	98	90.00	0.18	0.16
RM145	2	49.8	-	2	0	0	165–172	165	94.00	0.11	0.11
RM262	2	103.3	(CT)16	4	0	1	127–152	152	82.00	0.32	0.30
RM16	3	131.5	(TCG)5(GA)16	3	2	0	170–202	170	96.00	0.08	0.08
RM282	3	100.6	(GA)15	2	1	0	126–135	135	98.00	0.05^min	0.04^min
RM489	3	29.2	(ATA)8	3	0	2	242–312	242	92.00	0.15	0.15
RM554	3	106.0	(GA)14	2	0	0	251–259	259	58.00	0.49	0.37
RM518	4	25.5	(TC)15	3	0	0	164–171	171	56.00	0.59	0.52
RM537	4	8.5	(CCG)9	2	0	1	215–221	221	96.00	0.08	0.07
RM567	4	153.6	(GA)21	2	0	0	280–289	280	90.00	0.18	0.16
RM5473	4	107.35	(TC)20	4	0	0	125–145	125	60.87	0.58	0.53
RM39	5	87.7	(CT)17CCA(TC)3	2	0	0	110–115	115	96.00	0.08	0.07
RM178	5	118.8	(GA)5(AG)8	2	0	0	117–123	117	81.63	0.30	0.25
RM334	5	141.8	(CTT)20	3	0	0	178–190	190	54.17	0.59	0.52
RM413	5	26.7	(AG)11	4	1	0	67–105	67^min	79.59	0.35	0.33
RM507	5	-	(AAGA)7	2	0	0	244–253	253	86.00	0.24	0.21
RM510	6	20.8	(GA)15	2	0	0	213–223	223	94.00	0.11	0.11
RM527	6	61.2	(GA)17	2	0	0	212–220	220	78.00	0.34	0.28
RM3330	6	61.6	(CT)15	3	0	2	136–146	146	92.00	0.15	0.15
RM70	7	64.66	(ATT)33	4	0	0	185–211	185	58.00	0.59	0.54
RM214	7	34.7	(CT)14	4	0	0	116–144	116	50.00	0.66	0.60
RM320	7	62.5	(AT)11GTAT(GT)13	6	0	2	178–212	178	50.00	0.68	0.64
RM542	7	34.7	(CT)22	4	2	0	94–122	122	56.00	0.53	0.42
RM478	7	93.8	(AG)12	2	0	0	204–210	204	92.00	0.15	0.14
RM500	7	36.1	(AAG)9	2	0	0	251–257	257	60.00	0.48	0.36
RM560	7	54.2	(CT)12	2	1	0	130–150	150	98.00^max	0.05^min	0.04^min
RM342	8	78.4	(CAT)12	3	1	0	132–152	152	82.00	0.30	0.27
RM447	8	124.6	(CTT)8	5	0	1	105–139	139	56.00	0.62	0.58
RM215	9	99.4	(CT)16	3	2	0	144–164	144	96.00	0.08	0.08
RM105	9	32.1	(CCT)6	3	1	0	133–143	133	86.00	0.25	0.22
RM205	9	114.7	(CT)25	4	1	0	111–146	111	68.00	0.49	0.44
RM316	9	1.8	(GT)8(TG)9(TTTG)4(TG)4	2	0	0	192–199	192	90.00	0.18	0.16
RM464	9	3.3	(AT)21	2	1	0	142–150	150	98.00	0.05	0.04
RM285	9	1.8	(GA)12	2	0	0	142–150	150	87.50	0.22	0.19
RM304	10	73.0	(GT)2(AT)10(GT)33	7	2	1	103–158	158	30.77^min	0.78^max	0.75^max
RM474	10	-	(AT)13	4	0	0	215–248	103	60.00	0.58	0.53
RM496	10	113.0	(TC)14	4	0	0	246–285	285^max	82.00	0.32	0.30
RM591	10	118.3	(AC)10	5	0	2	231–272	272	64.00	0.54	0.51
RM21	11	85.7	(GA)18	5	2	0	135–160	116	88.00	0.22	0.21
RM206	11	102.9	(CT)21	5	2	0	134–172	134	78.00	0.37	0.35
RM224	11	120.1	(AAG)8(AG)13	4	0	0	129–145	145	64.00	0.54	0.50
RM287	11	68.6	(GA)21	4	1	1	98–115	115	60.87	0.52	0.44
RM536	11	55.1	(CT)16	3	0	0	221–237	237	79.17	0.35	0.32
RM20	12	-	(ATT)14	3	0	0	152–163	152	60.00	0.55	0.48
RM1337	12	-	(AG)21	4	0	1	164–185	185	56.00	0.60	0.54
RM5364	12	-	TC)13	4	0	0	127–156	156	62.50	0.54	0.48
RM7108	12	-	(AGAT)8	4	1	2	169–191	169	56.00	0.54	0.45

^aTotal (162), Min (2), Max (7), Avg. (3.24)

^bAvg. (167.96)

^cTotal (3776.21), Avg. (75.52)

^dTotal (17.67), Avg. (0.35)

^eTotal (15.87), Avg. (0.32)

Note: Major allele is described as the allele with the highest frequency. Rare alleles are described as alleles with a frequency less than 5%.