Table 1.
Genome sequencing and digital DNA-DNA hybridization (DDH) values estimated by GGDC 2.1.
| Strain | Reads (Mb) | No. of scaffolds | Genome size (bp) | G+C content (%) | Accession no. | GLM-based DDH estimate (Probability that the value exceeds 70%)b | |||
|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | ||||||
| Streptomyces sp. TP-A0882 (NBRC 110030)a (1) | 723.0 | 34 | 8,106,535 | 72.5 | BBOK01000000 | — | 94.4% (97.1%) | 45.1% (8.4%) | 43.2% (5.8%) |
| S. diastaticus subsp. ardesiacus NBRC 15402T (2) | 1005.0 | 32 | 7,851,547 | 72.7 | BEWC01000000 | — | 45.4% (8.8%) | 43.2% (5.7%) | |
| S. coelicoflavus NBRC 15399T (3) | 645.8 | 41 | 8,727,276 | 72.2 | BEWB01000000 | — | 45.7% (9.5%) | ||
| S. rubrogriseus NBRC 15455T (4) | 896.2 | 21 | 8,454,317 | 72.2 | BEWD01000000 | — | |||
aData from our previous study12.
bDistances are inferred using Formula 2 (identities/high-scoring segment pair (HSP) length) from the set of HSPs representing the most unique matches obtained by comparing each pair of genomes. These distances are transformed into values analogous to the DDH using a generalized linear model inferred from an empirical reference dataset comprising real DDH values and genome sequences.