Table 1.
Top 20 Differentially Expressed lncRNAs Based on Fold Change and Statistical Significance
| Differentially Regulated lncRNAs in NLH vs TC | ||||||
|---|---|---|---|---|---|---|
| SeqID | Chromosome | Relationship | Regulation | P Value | FDR | Fold Change |
| XR_008644 | chr17 | Intergenic | Down | .001 | 0.261 | 3.4 |
| XR_007984 | chrX | Intergenic | Down | .004 | 0.275 | 3.33 |
| XR_009360 | chr2 | Others | Down | .005 | 0.285 | 3.27 |
| XR_006015 | chr3 | Intergenic | Down | .019 | 0.363 | 3.26 |
| XR_005855 | chr6 | Intergenic | Down | .002 | 0.261 | 3.02 |
| XR_009031 | chr2 | Intergenic | Down | .006 | 0.285 | 2.95 |
| uc.128- | chr8 | Intergenic | Down | .014 | 0.347 | 2.91 |
| XR_008080 | chr2 | Intergenic | Down | .002 | 0.261 | 2.81 |
| MRAK029283 | chr11 | Intergenic | Down | .002 | 0.261 | 2.75 |
| XR_006363 | chrX | Intergenic | Down | .001 | 0.261 | 2.66 |
| XR_007420 | chr2 | Intergenic | Down | <.001 | 0.22 | 2.64 |
| XR_006210 | chr5 | Intergenic | Down | .003 | 0.27 | 2.59 |
| XR_006429 | chrX | Intergenic | Down | .007 | 0.289 | 2.52 |
| XR_008625 | chr9 | Intergenic | Down | .002 | 0.261 | 2.5 |
| MRAK140228 | chr5 | Sense_intron_overlap | Down | .008 | 0.293 | 2.5 |
| XR_008452 | chrX | Intergenic | Down | .001 | 0.261 | 2.49 |
| XR_006990 | chrUn | Intergenic | Down | .002 | 0.261 | 2.44 |
| U89530 | chr3 | Intergenic | Down | .024 | 0.402 | 2.43 |
| XR_005612 | chr1 | Others | Down | .002 | 0.261 | 2.41 |
| XR_008124 | chr18 | Others | Down | .015 | 0.354 | 2.39 |
| Differentially regulated lncRNAs in LH vs TC | ||||||
| SeqID | Chromosome | Relationship | Regulation | P Value | FDR | Fold Change |
| XR_006990 | chrUn | Intergenic | Down | <.001 | 0.019 | 2.96 |
| XR_008452 | chrX | Intergenic | Down | 4.09E-05 | 0.008 | 2.93 |
| XR_008661 | chr17 | Intergenic | Down | .009 | 0.138 | 2.87 |
| XR_008644 | chr17 | Intergenic | Down | <.001 | 0.037 | 2.8 |
| XR_009360 | chr2 | Others | Down | <.001 | 0.028 | 2.77 |
| XR_006015 | chr3 | Intergenic | Down | .001 | 0.052 | 2.68 |
| uc.123+ | chr8 | Intergenic | Up | 4.79E-06 | 0.002 | 2.65 |
| XR_009031 | chr2 | Intergenic | Down | .001 | 0.047 | 2.63 |
| XR_008124 | chr18 | Others | Down | .001 | 0.055 | 2.57 |
| XR_008080 | chr2 | Intergenic | Down | 1.96E-05 | 0.005 | 2.57 |
| MRAK043380 | chr7 | Sense_intron_overlap | Down | .001 | 0.046 | 2.52 |
| U89530 | chr3 | Intergenic | Down | .001 | 0.055 | 2.49 |
| uc.104- | chr3 | Sense_intron_overlap | Up | <.001 | 0.022 | 2.46 |
| XR_007984 | chrX | Intergenic | Down | .003 | 0.078 | 2.42 |
| MRAK081790 | chrX | Sense_intron_overlap | Down | .003 | 0.074 | 2.41 |
| XR_005855 | chr6 | Intergenic | Down | .001 | 0.043 | 2.38 |
| uc.382+ | chr3 | Intergenic | Up | .003 | 0.077 | 2.36 |
| XR_007260 | chr15 | Intergenic | Down | 1.06E-07 | 0.000476 | 2.36 |
| XR_005612 | chr1 | Others | Down | 8.59E-07 | 0.001 | 2.34 |
| uc.80- | chr3 | Sense_intron_overlap | Down | .003 | 0.08 | 2.34 |
| Differentially regulated lncRNA in LH vs NLH | ||||||
| SeqID | Chromosome | Relationship | Regulation | P Value | FDR | Fold Change |
| uc.396- | chr19 | Intergenic | Up | .003 | 0.371 | 2.17 |
| uc.208+ | chr4 | Antisense_intron_overlap | Up | .002 | 0.371 | 2.14 |
| uc.342+ | chr7 | Others | Up | .002 | 0.351 | 2.14 |
| uc.362+ | chr6 | Intergenic | Up | .003 | 0.371 | 2.13 |
| XR_006950 | chr4 | Intergenic | Up | .005 | 0.4 | 2.11 |
| uc.51+ | chr14 | Intergenic | Up | .001 | 0.351 | 2.09 |
| uc.104- | chr3 | Sense_intron_overlap | Up | .001 | 0.351 | 2.07 |
| uc.224- | chr4 | Intergenic | Up | .007 | 0.425 | 2.02 |
| uc.123+ | chr8 | Intergenic | Up | .007 | 0.422 | 2.02 |
| MRAK012622 | chr2 | Sense_exon_overlap | Up | .009 | 0.435 | 2.01 |
| uc.423+ | chr18 | Others | Down | .008 | 0.435 | 1.98 |
| MRAK015046 | chr5 | Sense_exon_overlap | Up | .013 | 0.435 | 1.96 |
| MRAK015046 | chr5 | Sense_exon_overlap | Up | .013 | 0.435 | 1.96 |
| MRuc009sah | chr8 | Others | Up | .001 | 0.351 | 1.88 |
| MRAK054211 | chr10 | Sense_exon_overlap | Down | .041 | 0.519 | 1.87 |
| AJ535460 | chr20 | Intergenic | Up | .002 | 0.351 | 1.86 |
| MRAK035378 | chr3 | Sense_exon_overlap | Down | .028 | 0.464 | 1.85 |
| uc.120+ | chr11 | Antisense_intron_overlap | Up | .044 | 0.525 | 1.83 |
| MRAK079502 | chrX | Others | Up | .018 | 0.447 | 1.82 |
| uc.312- | chr1 | Sense_intron_overlap | Up | .008 | 0.435 | 1.78 |