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. 2018 May 2;19:320. doi: 10.1186/s12864-018-4709-7

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Examples of chromosomal aberrations found in P. ramorum in California. See Fig. 4 for further explanation of the figure legend. A wild type euploid isolate Pr-1556 was used as a reference. a Nwt isolate Pr140.9 from Shreve oak (Q. parvula var. shrevei) is an example of monosomy (1× CCNV) at scaffold 9. b Nwt isolate Pr-455 from mountain sweet cicely Osmorhiza berteroi showing copy number neutral LOH (cnLOH) at scaffolds 6, 9, 17, 19, 24, 27, 28, and 30. c A re-isolate 9D1 from a log of coast live oak showing a small copy number change at scaffold 9 in comparison to its original isolate Pr-1556 (wt, bay) used as a reference. 9D1 is likely a heterokaryon (HK) carrying trisomic (3× CCNV) and euploid nuclei. d Nwt isolate Pr-472 from Mexican orange blossom Choisya ternata is likely a heterokaryon carrying at least two types of trisomic nuclei, one with 3× CCNV at scaffolds (5, 8, 14, 15, 20) and the other with 3× CCNV at scaffold 10 (see Fig. 6 for scaffold linkage grouping)