Skip to main content
. 2018 Apr 23;14(4):e1006097. doi: 10.1371/journal.pcbi.1006097

Table 1. List of 26 protein domains considered in the tests.

Protein domain Subdomain (CDD/Pfam ID)
RNase RNase_HI_RT_Ty1 (cd09272)
RNase_HI_RT_Ty3 (cd09274)
RNase_HI_like (cd09279)
RNase_HI_RT_DIRS1 (cd09275)
Integrase rve (pfam00665)
GAG Retrotrans_gag (pfam03732)
Retrotran_gag_2 (pfam14223)
Retrotran_gag_3 (pfam14244)
gag-asp_proteas (pfam13975)
DUF1759 (pfam03564)
AP retropepsin_like (cd00303)
retropepsin_like_LTR_1 (cd05481)
retropepsin_like_LTR_2 (cd05484)
RP_Saci_like (cd06094)
RVP_2 (pfam08284)
Peptidase_A17 (pfam05380)
DUF1758 (pfam05585)
RT RT_LTR (cd01647)
RT_pepA17 (cd01644)
RVT_1 (pfam00078)
RVT_2 (pfam07727)
RVT_3 (pfam13456)
RT_DIRS1 (cd03714)
Pre-integrase gag_pre-integrase (pfam13976)
YR INT_Cre_C (cd00799)
DNA_BRE_C (cd00397)