Table 4. Comparison of the number of annotations found by each method for each superfamily at the highest recall point.
Column A indicates the number of annotations found exclusively by TE-LearnerLTR, column I is the number of annotations that were predicted by both methods and column B indicates the number of annotations found exclusively by the compared method.
| D. melanogaster | A. thaliana | |||||
|---|---|---|---|---|---|---|
| Superfamily | A | I | B | A | I | B |
| TE-LearnerLTR vs. RepeatMasker | ||||||
| Copia | 6 | 165 | 11 | 49 | 596 | 351 |
| Gypsy | 82 | 1625 | 1072 | 114 | 1053 | 1404 |
| Bel-Pao | 5 | 344 | 183 | – | – | – |
| TE-LearnerLTR vs. Censor | ||||||
| Copia | 2 | 169 | 11 | 50 | 595 | 366 |
| Gypsy | 81 | 1626 | 1065 | 104 | 1063 | 1399 |
| Bel-Pao | 11 | 338 | 172 | – | – | – |
| TE-LearnerLTR vs. LtrDigest | ||||||
| Copia | 128 | 43 | 1 | 507 | 138 | 18 |
| Gypsy | 1293 | 414 | 46 | 1134 | 33 | 9 |
| Bel-Pao | 218 | 131 | 5 | – | – | – |