Table 1.
The numbers of decomposition enzyme detected by RNA-Seq and our previous proteomic study of T. versicolor F21a.
| Enzyme classes | CAZyme module | No. of decomposition enzymes in genome | No. of decomposition enzymes detected by RNA-Seq | No. of decomposition enzymes detected by our previous proteomic study | No. of decomposition enzymes in DEGs by RNA-Seq |
|---|---|---|---|---|---|
| Auxiliary activities | AA2 | 27 | 21 | 4 | 11 |
| AA3 | 23 | 13 | 9 | 10 | |
| AA5 | 9 | 5 | 3 | 3 | |
| AA8 | 2 | 1 | 0 | ||
| AA9 | 18 | 13 | 0 | 3 | |
| Carbohydrate esterases | CE1 | 26 | 19 | 14 | 8 |
| CE12 | 2 | 2 | 2 | 1 | |
| CE4 | 5 | 3 | 2 | 2 | |
| CE8 | 2 | 1 | 0 | ||
| Glycoside hydrolases | GH1 | 2 | 2 | 1 | 1 |
| GH10 | 6 | 5 | 0 | 2 | |
| GH115 | 2 | 1 | 1 | 1 | |
| GH12 | 5 | 4 | 0 | 2 | |
| GH128 | 4 | 3 | 0 | 3 | |
| GH13 | 6 | 5 | 3 | 4 | |
| GH15 | 4 | 3 | 1 | 2 | |
| GH16 | 29 | 20 | 4 | 12 | |
| GH17 | 1 | 1 | 1 | 1 | |
| GH18 | 20 | 16 | 2 | 9 | |
| GH2 | 5 | 4 | 1 | 2 | |
| GH27 | 3 | 2 | 1 | 2 | |
| GH28 | 9 | 6 | 1 | 4 | |
| GH3 | 12 | 7 | 6 | 2 | |
| GH30 | 4 | 4 | 0 | 2 | |
| GH31 | 5 | 3 | 4 | 2 | |
| GH32 | 3 | 3 | 1 | 1 | |
| GH35 | 2 | 2 | 1 | 1 | |
| GH43 | 3 | 2 | 0 | ||
| GH45 | 1 | 0 | |||
| GH47 | 5 | 3 | 4 | 1 | |
| GH5 | 22 | 14 | 8 | 8 | |
| GH51 | 2 | 2 | 0 | 1 | |
| GH53 | 1 | 1 | 0 | ||
| GH55 | 2 | 2 | 1 | 2 | |
| GH6 | 1 | 1 | 0 | ||
| GH7 | 4 | 4 | 0 | 1 | |
| GH71 | 5 | 2 | 0 | 1 | |
| GH74 | 2 | 1 | 1 | 1 | |
| GH78 | 4 | 1 | 0 | ||
| GH79 | 11 | 8 | 1 | 4 | |
| GH85 | 1 | 1 | 1 | ||
| GH9 | 1 | 1 | 0 | ||
| Polysaccharide lyases | PL14 | 6 | 6 | 2 | 3 |
| PL15 | 2 | 2 | |||
| PL4 | 1 | 0 | |||
| PL8 | 2 | 2 | 2 | 2 | |
| Total | 312 | 220 | 84 | 115 |