Table 1. Synthetic oligonucleotides (in complementary pairs) used for crystallography and UNG activity assays.
5′FAM-idu_2 (crystallography) | FAM-5′-AAAGATAACATT-3′ |
3′- TTCTAUTGTAA-5′ | |
5′-FAM-U | FAM-5′- ATATATAUATATATAACGCAGACACGTAGCAC-3′ |
5′-G-BHQ1 (U:G duplex for ung assay) | BHQ1–3′-TATATATATATGTATATATTGCGTCTGTGCATCGTG-5′ |
5′-FAM-U | FAM-5′- ATATATAUATATATAACGCAGACACGTAGCAC-3′ |
5′-A-BHQ1 (U:A duplex for ung assay) | BHQ1–3′-TATATATATATATATATATTGCGTCTGTGCATCGTG-5′ |
FAM-5′ refers to the presence of a covalently linked 6-FAM label at the 5′ end of the oligonucleotide. BHQ1 refers to a covalently linked Black Hole Quencher 1 label at the 3′ end of the oligonucleotide. Uracil is shown in bold and underlined.