Skip to main content
. 2018 Feb 26;46(8):3921–3936. doi: 10.1093/nar/gky138

Table 1. Regulatory functions of Y-gene TFs.

TF Regulatory function Family Size (aa) Data source Target gene or operon
Y-name Renamed
YagI XynR Regulator of xylonate catabolism IclR 252 SELEX yagE/yagA (single target)yagE/yagA (single target)
Regulon None
YbaO DecR Regulator of cysteine detoxification AsnC 152 SELEX yhaO (single target)yhaO (single target)
Regulon None
YbiH CecR Regulator of cefoperazone-chloramphenicol sensitivity TetR 223 SELEX cecR (single target)cecR (single target)
Regulon cecR-ybhGFSR
YbjK RcdA Regulator of csgD (master regulator of biofilm formation)Regulator of csgD (master regulator of biofilm formation) TetR 178 SELEX ybjJ/ybjK,sulA/sxy,ycdT,csgD,ycgF/ycgZ,ydeI,asr,yehA,rrlD
Regulon asr,bluF,csgDEFG,sulA,yagK,ydeI
YcdC RutR Regiator of pyrimidine metabolisma and purine degradation TetR 212 SELEX carA,gadW,gadC,glnE,glxR,deoL,ycdM/ycdC
Regulon carAB,fepB,gadAXW,nemR,pdeR,rutA,rutA
YcjZ PgrR Regulator of peptidoglycan (PG) recycling LysR 299 SELEX leuL/leuO,pheP,ycjY/ycjZ,ydjE,yedX/yedS,xapR,yfgF/yfgG,yhiI,rfaL,rfaS,yjgL
Regulon ycjG,ycjXF-tyrR,ycjY-ymfDC-mpaA
YdeO PhhR Regulator of intracellular pH homeostatis AraC 253 SELEX hyaA,appC,cadX,hdeD,nhaA,slp,yiiS
Regulon appCBXA,gadAXW,gadEF-mdtEF,hyaABCDEF,safA-ydeO,slp-dctR
YdcN SutR Regulator of sulfur utilization Xre 178 SELEX yagR,xseB,ydcO/ydcN,ynfG,pfkB,fliZ,ypfN,yfgM,yfiC,tdcF,yjcS
Regulon cysE,fliAZ-tcyJ,sutR
YdhM NemR Regulator of N-ethylmaleimide reductase TetR 199 SELEX nemR (single target)
Regulon nemRA-gloA
YeaM NimR Regulator of resistance to 2-nitroimidazole AraC 273 SELEX yeaM/yeaN (single target)
Regulon nimR,nimT
YedW HprR HprSR-TCS response regulator of H2O2 sensitivity OmpR 223 SELEX ydeS,ybaS/yegT,dctA
Regulon cusCFBA,cusRS,cyoABCDE,yedX
YgiP Dan Nucleoid-associated regulator for anaerobic growth LysR 310 SELEX (688 binding sites)
Regulon ttdA,ttdR