Table 1.
Data used in this study. The World Health Organization (WHO) numbers are structured such that M is mammal, R is reptile, HOM is Homo, CAN is canine, DAS is Dasypus (an armadillo), CEB is Cebus (a primate), ARV is Arvicanthis (a rodent), TAR is Tarentolae and LAT is Latastia (a long-tailed lizard). The top two rows indicate the isolates for L. guyanensis and L. naiffi genomes published here.
| species | source | data type | name or WHO number | SRAa | number and length of reads | reference |
|---|---|---|---|---|---|---|
| L. guyanensis | SRA | reads | LgCL085 | ERX180458 | 15 272 969 (100 bp paired-end) | this study |
| L. naiffi | SRA | reads | LnCL223 | ERX180449 | 8 131 246 (100 bp paired-end) | this study |
| L. braziliensis | Sanger FTP site | genome and reads | MHOM/BR/1975/M2904 | ERX005631 (LbrM2904 v3) | 26 007 384 (76 bp paired-end) | Rogers et al. [48] |
| L. guyanensis | SRA | reads | MHOM/BR/1975/M4147 | SRX767379 | 6 225 035 (100 bp paired-end) | Harkins et al. [53] |
| L. lainsoni | SRA | reads | MHOM/BR/1981/M6426 | SRX764333 | 4 630 952 (100 bp paired-end) | Harkins et al. [53] |
| L. naiffi | SRA | reads | MDAS/BR/1979/M5533 | SRX764332 | 9 646 461 (100 bp paired-end) | Harkins et al. [53] |
| L. panamensis | Genbank and SRA | genome and reads | MHOM/PA/1994/PSC-1 | SRX681913; (CP009370: CP009404) | 5 875 837 (100 bp paired-end) | Llanes et al. [51] |
| L. panamensis | SRA | reads | MHOM/PA/1974/WR120 | SRX767384 | 4 536 341 (100 bp paired-end) | Harkins et al. [53] |
| L. shawi | SRA | reads | MCEB/BR/1984/M8408 | SRX764331 | 5 110 479 (100 bp paired-end) | Harkins et al. [53] |
| L. peruviana | Genbank and SRA | genome and reads | PAB-4377 | ERX556165 (Bioproject ID: PRJEB7263) | 16 117 316 (100 bp paired end) | Valdivia et al. [52] |
| L. peruviana | Genbank and SRA | genome and reads | LEM1537 (MHOM/PE/1984/LC39) | ERX556164 (Bioproject ID: PRJEB7263) | 9 378 317 (100 bp paired end) | Valdivia et al. [52] |
aSRA stands for SRA or TriTrypDB accession ID.