Table 2. Variants identified in CRD patients together with the analyses performed.
Family no. |
Analysis |
Gene | Variant classification | Genotype | Reference | |||
---|---|---|---|---|---|---|---|---|
RPGR-ORF15 sequencing | SNP microarray of ABCA4 | NGS RD panel | WES | |||||
Dominant inheritance | ||||||||
9 |
- |
- |
+ |
- |
PRPH2 |
c.592A>C, p.(Ser198Arg; pathogenic II) |
heterozygous |
[a] |
18 |
- |
- |
+ |
- |
GUCA1A |
c.312C>A, p.(Asn104Lys) |
heterozygous |
Jiang et al., 2008 |
Recessive inheritance | ||||||||
5 |
- |
+ |
+ |
- |
PROM1 |
c.1612delT, p.(Trp538Glyfs*15; pathogenic Ia)
c.2389dupG, p.(Ile798Hisfs*20; pathogenic Ia) |
heterozygous
heterozygous |
[a]
[a] |
12 |
- |
+ |
+ |
- |
CNGB3 |
c.819_826del8, p.(Arg274Valfs*13)
gnomAD browser prevalence: 0.0001185 |
homozygous |
Sundin et al. 2000 |
17 |
- |
+ |
+ |
+ |
ATF6 |
c.1691A>G, p.(Asp564Gly; pathogenic II) |
homozygous |
[Skorczyk-Werner et al., 2017] 1 |
Recessive inheritance – single mutation identified | ||||||||
3 |
- |
+ |
+ |
- |
ABCA4 |
c.5882G>A, p.(Gly1961Glu)
gnomAD browser prevalence: 0.003931 |
heterozygous |
Allikmets et al. 1997 |
6 |
- |
+ |
+ |
- |
CNGB3 |
c.1148delC, p.(Thr383Ilefs*13)
gnomAD browser prevalence: 0.002810 |
heterozygous |
Sundin et al. 2000 |
X – linked inheritance | ||||||||
13 |
+ |
- |
- |
- |
RPGR
-ORF15 |
c.3142_3143dupAA, p.(Glu1049Argfs*41; pathogenic Ic) |
hemizygous |
[a] |
7 | + | - | - | - | RPGR -ORF15 | c.2716G>T, p.(Glu906*) | hemizygous | Sharon et al. 2003 |
[a] – this study; 1– identified in this study, but already published; ; + molecular analysis was performed, - molecular analysis was not performed; Variants designation is based on NM_000322 for PRPH2, NM_001319061 for GUCA1A, NM_006017 for PROM1, NM_019098 for CNGB3, NM_007348 for ATF6, NM_000350 for ABCA4 and NM_001331041 for RPGR-ORF15 (GRCh38). Classification of novel variants according to American College of Medical Genetics and Genomics (ACMG) guidelines. The gnomAD browser prevalences are provided for mutated alleles in non-Finnish Europeans.